Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq2 98.7 9e-16 seq1 86.0 6e-12 >seq2 Length=7009248 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||| || | || ||||||||| || |||||||| | | Sbjct 3059630 CCACCGCGCAGACGAAGAACCAAGTGCAATGTGCTCTCTTTTTGGATGTTGTAATCACTC 3059571 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || | ||| || || ||| ||||||||||||| || || || || Sbjct 3059570 AGTGTCCGGCCGTCTTCCAACTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGG 3059511 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || ||||| ||||| ||| ||| ||||| |||| |||| ||||| | ||||| Sbjct 3059510 ATACCCTCTTTGTCTTGGATCTTCGACTTGACGTTG-TCGATTGTGTCTGATGATTCGAC 3059452 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | || || || || || || ||||| || |||||||| Sbjct 3059451 TTCCAGCGTTATTGTCTTCCCAGTAAGCGTCTTTACGAAGATCTGCAT 3059404 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | || | ||||| || | || ||||| || ||||| ||||| || Sbjct 3058891 CCTCCGCGGAGACGTAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGAT 3058832 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| || |||||| ||||||| ||||||||||| || || Sbjct 3058831 AGAGTACGGCCGTCTTCGAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGATCCGGGGGA 3058772 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| ||||||||| || || ||||| | |||| |||||||| | ||| || Sbjct 3058771 ATGCCTTCCTTGTCCTGAATCTTGGACTTGACATTATCGATGGTGTCCGAAGACTCCACC 3058712 Query 127067 TCGACGGTCACCGTTTTGCCGGT 127089 || | ||| | || |||||||| Sbjct 3058711 TCAAGGGTGATGGTCTTGCCGGT 3058689 Score = 89.7 bits (98), Expect = 5e-13 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || |||||||| ||||| || || || || ||| || ||||| || || Sbjct 3059144 GTGGATTCCTTTTGAATGTTGTAGTCAGACAGAGTACGTCCATCCTCAAGCTGCTTGCCG 3059085 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || ||||||| ||||||||||| ||||| ||||||||||||||| ||| || |||| Sbjct 3059084 GCAAAGATCAAGCGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTG 3059025 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||| |||| || || || | ||| | || || || || || || Sbjct 3059024 ACATTGTCGATGGTATCCGAGGATTCCACCTCCAAGGTGATGGTCTTTCCAGTGAGCGTC 3058965 Query 127097 TTTACAA 127103 || |||| Sbjct 3058964 TTCACAA 3058958 >seq1 Length=10671843 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/228 (69%), Gaps = 8/228 (4%) Strand=Plus/Plus Query 47355 GAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGA 47414 || |||||| |||| ||| ||||| || | |||||||| || || | | || Sbjct 3823323 GAGGCCGTCACCATCGAGCAAGAGTTCTTGACAGAGGCTCTACCTTGCGCTCTGTTAGGT 3823382 Query 47415 ATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAG 47474 |||||||||| |||||| | ||||||||||| || || || || || ||| | || Sbjct 3823383 ATGAACGCGGGTCTGATGAAGCAATACATCGAATTCGTGGCAGATCGTCTACTCCT--AG 3823440 Query 47475 CT-AAAGTATCCCAAGATTTACCACACCGAG---AATCCATTCGAGTTTATGAACAACAT 47530 || ||| || ||| ||| ||| || | ||||||||||| || ||| | || Sbjct 3823441 CTCTCGGTAACC--AGAAGTACTACAACGCGACAAATCCATTCGACTTCATGGAGTCGAT 3823498 Query 47531 TTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 || | | |||||||||||||| ||||||||||| || || || || Sbjct 3823499 ATCATTGGCCGGCAAGACCAACTTCTTCGAGAAGCGGGTTGGTGACTA 3823546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500758393680