Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq2 98.7 9e-16
seq1 86.0 6e-12
>seq2
Length=7009248
Score = 98.7 bits (108), Expect = 9e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|||||||| | || | ||||| || | || ||||||||| || |||||||| | |
Sbjct 3059630 CCACCGCGCAGACGAAGAACCAAGTGCAATGTGCTCTCTTTTTGGATGTTGTAATCACTC 3059571
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || || || | ||| || || ||| ||||||||||||| || || || ||
Sbjct 3059570 AGTGTCCGGCCGTCTTCCAACTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGG 3059511
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| ||||| ||||| ||| ||| ||||| |||| |||| ||||| | |||||
Sbjct 3059510 ATACCCTCTTTGTCTTGGATCTTCGACTTGACGTTG-TCGATTGTGTCTGATGATTCGAC 3059452
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
||| | || | || || || || || || ||||| || ||||||||
Sbjct 3059451 TTCCAGCGTTATTGTCTTCCCAGTAAGCGTCTTTACGAAGATCTGCAT 3059404
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|| ||||| | || | ||||| || | || ||||| || ||||| ||||| ||
Sbjct 3058891 CCTCCGCGGAGACGTAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGAT 3058832
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || || || ||||| || |||||| ||||||| ||||||||||| || ||
Sbjct 3058831 AGAGTACGGCCGTCTTCGAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGATCCGGGGGA 3058772
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||| ||||||||| || || ||||| | |||| |||||||| | ||| ||
Sbjct 3058771 ATGCCTTCCTTGTCCTGAATCTTGGACTTGACATTATCGATGGTGTCCGAAGACTCCACC 3058712
Query 127067 TCGACGGTCACCGTTTTGCCGGT 127089
|| | ||| | || ||||||||
Sbjct 3058711 TCAAGGGTGATGGTCTTGCCGGT 3058689
Score = 89.7 bits (98), Expect = 5e-13
Identities = 132/187 (71%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| || || |||||||| ||||| || || || || ||| || ||||| || ||
Sbjct 3059144 GTGGATTCCTTTTGAATGTTGTAGTCAGACAGAGTACGTCCATCCTCAAGCTGCTTGCCG 3059085
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
|| ||||||| ||||||||||| ||||| ||||||||||||||| ||| || ||||
Sbjct 3059084 GCAAAGATCAAGCGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTG 3059025
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | |||| ||| |||| || || || | ||| | || || || || || ||
Sbjct 3059024 ACATTGTCGATGGTATCCGAGGATTCCACCTCCAAGGTGATGGTCTTTCCAGTGAGCGTC 3058965
Query 127097 TTTACAA 127103
|| ||||
Sbjct 3058964 TTCACAA 3058958
>seq1
Length=10671843
Score = 86.0 bits (94), Expect = 6e-12
Identities = 158/228 (69%), Gaps = 8/228 (4%)
Strand=Plus/Plus
Query 47355 GAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGA 47414
|| |||||| |||| ||| ||||| || | |||||||| || || | | ||
Sbjct 3823323 GAGGCCGTCACCATCGAGCAAGAGTTCTTGACAGAGGCTCTACCTTGCGCTCTGTTAGGT 3823382
Query 47415 ATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAG 47474
|||||||||| |||||| | ||||||||||| || || || || || ||| | ||
Sbjct 3823383 ATGAACGCGGGTCTGATGAAGCAATACATCGAATTCGTGGCAGATCGTCTACTCCT--AG 3823440
Query 47475 CT-AAAGTATCCCAAGATTTACCACACCGAG---AATCCATTCGAGTTTATGAACAACAT 47530
|| ||| || ||| ||| ||| || | ||||||||||| || ||| | ||
Sbjct 3823441 CTCTCGGTAACC--AGAAGTACTACAACGCGACAAATCCATTCGACTTCATGGAGTCGAT 3823498
Query 47531 TTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578
|| | | |||||||||||||| ||||||||||| || || || ||
Sbjct 3823499 ATCATTGGCCGGCAAGACCAACTTCTTCGAGAAGCGGGTTGGTGACTA 3823546
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475500758393680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |