Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq3 141 1e-28
seq1 100 3e-16
>seq3
Length=5817774
Score = 141 bits (156), Expect = 1e-28
Identities = 404/617 (65%), Gaps = 7/617 (1%)
Strand=Plus/Plus
Query 116668 TAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAG 116727
||||||||||||||||| ||||| | || | || || || || | || || ||
Sbjct 3751508 TAGAGGGCCTCAAACTCGTCACCGTATACGTCAGCCAGGCCCGGAGCTTCATTGGGGCAA 3751567
Query 116728 AAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGC 116787
|| || | ||||| || || ||| || |||||||||||||| |||||| |||| ||
Sbjct 3751568 AACAGCGTCCATTCGGCATTCTTCTCGACACGCTTCATGAAGAGATCTGGGGTCCAAAGA 3751627
Query 116788 GCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAA 116847
|| ||||||| || || ||| |||| || | || ||||| ||||| |||||
Sbjct 3751628 GCTAAGAAGAGGTCACGGGCGCGGACTTCCTCCTTGCCGTGATTCTTGCGCAAGTCCAAG 3751687
Query 116848 AAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGAC-- 116905
|| || | || ||| |||||||| || || ||||| || |||| | | ||| || |
Sbjct 3751688 AACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGACGGCGAACG-CACCTGGCCGCTT 3751746
Query 116906 --GACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGAT 116963
||| | |||| ||||| || || || || || ||||| ||||| || | |||
Sbjct 3751747 GTTACCTCCTTGGTCGACATATCTTGCGGTGTTATTGAAGACGCGGAGCATAGGCACGAT 3751806
Query 116964 ACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGAT 117023
|| | || |||||||| || ||| ||| | ||||||||| | || |
Sbjct 3751807 CCCGTTGGAAGATCCATTTGTGCCGGCAATGTAAGAGCCGGTGGCTCTGATACGATGTAC 3751866
Query 117024 GTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTA 117083
|| || || || || || ||| ||| || || || || | | | | ||||
Sbjct 3751867 GTTCAGCCCGATGCCTCCCGCCGTCTTCGAAATCAAGGCACAGGTCTTCAAGGTATCGTA 3751926
Query 117084 GATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCT 117143
|| || || || ||| | || | |||||||||| || || ||| || ||
Sbjct 3751927 AATACCCTCAATGCTGTCCTCTTTCATGTCGATGAGGAAACAAGACGCCATCTGCGGTTG 3751986
Query 117144 TGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCT 117202
|| |||||||| |||||||| ||||| | ||||| |||| ||| | ||||||||
Sbjct 3751987 CGGGGTACCAGCATTGAAGAGAGTTGGCGAGGCGTGTGTGAA-GTACTTCTGGGACATGA 3752045
Query 117203 TATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCA 117262
| |||||||| | ||| ||| || || || ||| || | | || ||||
Sbjct 3752046 GGTTATAGGTCTCGAGGACCTTCTCAATATCATCGCCCCAAATGCCAACAGCAACACGCA 3752105
Query 117263 TAAACATGTATTGGGGT 117279
| | ||||| ||| |||
Sbjct 3752106 TTATCATGTGTTGAGGT 3752122
>seq1
Length=10671843
Score = 100 bits (110), Expect = 3e-16
Identities = 111/148 (75%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 127532 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 127591
|| ||||||||||| || ||||| ||||| || |||||| |||||| ||||| |||||
Sbjct 3823246 TGAAGACCCTCGTCGCGAGAGATAAGTTCGTTTGAGAAGGTCAGACCCGGCATAAGACCG 3823187
Query 127592 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 127651
|||||||| | |||||| || | | || || || |||||||| ||||| |||
Sbjct 3823186 CGCTTCTTAAGCCAGAAGATGGAAGCGAAAGAACCGCTAAAGAAGATACCCTCAACAGCA 3823127
Query 127652 GCGAACGCAAATAGACGCTCGGCAAAGG 127679
||||| |||| || || | |||||||
Sbjct 3823126 GCGAAGGCAACAAGGCGTTGAGCAAAGG 3823099
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613507146318120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |