Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3 141 1e-28 seq1 100 3e-16 >seq3 Length=5817774 Score = 141 bits (156), Expect = 1e-28 Identities = 404/617 (65%), Gaps = 7/617 (1%) Strand=Plus/Plus Query 116668 TAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAG 116727 ||||||||||||||||| ||||| | || | || || || || | || || || Sbjct 3751508 TAGAGGGCCTCAAACTCGTCACCGTATACGTCAGCCAGGCCCGGAGCTTCATTGGGGCAA 3751567 Query 116728 AAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGC 116787 || || | ||||| || || ||| || |||||||||||||| |||||| |||| || Sbjct 3751568 AACAGCGTCCATTCGGCATTCTTCTCGACACGCTTCATGAAGAGATCTGGGGTCCAAAGA 3751627 Query 116788 GCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAA 116847 || ||||||| || || ||| |||| || | || ||||| ||||| ||||| Sbjct 3751628 GCTAAGAAGAGGTCACGGGCGCGGACTTCCTCCTTGCCGTGATTCTTGCGCAAGTCCAAG 3751687 Query 116848 AAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGAC-- 116905 || || | || ||| |||||||| || || ||||| || |||| | | ||| || | Sbjct 3751688 AACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGACGGCGAACG-CACCTGGCCGCTT 3751746 Query 116906 --GACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGAT 116963 ||| | |||| ||||| || || || || || ||||| ||||| || | ||| Sbjct 3751747 GTTACCTCCTTGGTCGACATATCTTGCGGTGTTATTGAAGACGCGGAGCATAGGCACGAT 3751806 Query 116964 ACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGAT 117023 || | || |||||||| || ||| ||| | ||||||||| | || | Sbjct 3751807 CCCGTTGGAAGATCCATTTGTGCCGGCAATGTAAGAGCCGGTGGCTCTGATACGATGTAC 3751866 Query 117024 GTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTA 117083 || || || || || || ||| ||| || || || || | | | | |||| Sbjct 3751867 GTTCAGCCCGATGCCTCCCGCCGTCTTCGAAATCAAGGCACAGGTCTTCAAGGTATCGTA 3751926 Query 117084 GATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCT 117143 || || || || ||| | || | |||||||||| || || ||| || || Sbjct 3751927 AATACCCTCAATGCTGTCCTCTTTCATGTCGATGAGGAAACAAGACGCCATCTGCGGTTG 3751986 Query 117144 TGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCT 117202 || |||||||| |||||||| ||||| | ||||| |||| ||| | |||||||| Sbjct 3751987 CGGGGTACCAGCATTGAAGAGAGTTGGCGAGGCGTGTGTGAA-GTACTTCTGGGACATGA 3752045 Query 117203 TATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCA 117262 | |||||||| | ||| ||| || || || ||| || | | || |||| Sbjct 3752046 GGTTATAGGTCTCGAGGACCTTCTCAATATCATCGCCCCAAATGCCAACAGCAACACGCA 3752105 Query 117263 TAAACATGTATTGGGGT 117279 | | ||||| ||| ||| Sbjct 3752106 TTATCATGTGTTGAGGT 3752122 >seq1 Length=10671843 Score = 100 bits (110), Expect = 3e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 127532 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 127591 || ||||||||||| || ||||| ||||| || |||||| |||||| ||||| ||||| Sbjct 3823246 TGAAGACCCTCGTCGCGAGAGATAAGTTCGTTTGAGAAGGTCAGACCCGGCATAAGACCG 3823187 Query 127592 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 127651 |||||||| | |||||| || | | || || || |||||||| ||||| ||| Sbjct 3823186 CGCTTCTTAAGCCAGAAGATGGAAGCGAAAGAACCGCTAAAGAAGATACCCTCAACAGCA 3823127 Query 127652 GCGAACGCAAATAGACGCTCGGCAAAGG 127679 ||||| |||| || || | ||||||| Sbjct 3823126 GCGAAGGCAACAAGGCGTTGAGCAAAGG 3823099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613507146318120