Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1 120 5e-22 >seq1 Length=10671843 Score = 120 bits (132), Expect = 5e-22 Identities = 327/494 (66%), Gaps = 25/494 (5%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||| ||| ||||| || |||||||| ||||||| || Sbjct 3823532 CTTCTCGAAGAAGTTGGTCTTGCCGGCCAATGATATCGACTCCATGAAGTCGAATGGATT 3823473 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 || ||| ||| |||| | |||||||| || | | |||||||| ||||| Sbjct 3823472 TGTCGCGTTGTAGTACTTCTGGTTACCGAGAGCTAGGAGTAGACGATCTGCCACGAATTC 3823413 Query 159769 GATGTA--GCTACACATCTGCTCACAGTTGATCCCCAGC--AGCCTAACGGGGAGCGCTT 159824 |||||| ||| |||| | | ||| || || | | ||| || || || || | Sbjct 3823412 GATGTATTGCT--TCATCAGACCCGCGTTCATACCTAACAGAGCGCAA--GGTAGAGCCT 3823357 Query 159825 CCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGT 159884 | | || ||||| | ||| || ||| || || || ||| |||| || | Sbjct 3823356 CTGTCAAGAACTCTTGCTCGATGGTGACGGCCTCAGT---AAT------GACATCTT-GA 3823307 Query 159885 AC-CCCGGCTTGCCCAAAATGTGGTCCTTA------AACAGGAGGCACGCAAAGTCGCAG 159937 || || |||||| || || | || |||||||| || ||||| Sbjct 3823306 ACAGCCTGCTTGCTTGGTCGGTTGTTGAGATGAGAGAAGAGGAGGCAGGCGAAGTCAGTA 3823247 Query 159938 TGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCA 159997 || || |||||||| |||||||| | ||||| || | | | || |||||||| | || Sbjct 3823246 TGAAGACCCTCGTCGCGAGAGATAAGTTCGTTTGAGAAGGTCAGACCCGGCATAAGACCG 3823187 Query 159998 CGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCC 160057 ||| || ||||| || |||| || |||| ||||||||| ||||| ||||| || || Sbjct 3823186 CGCTTCTTAAGCCAGAAGATGGAAGCGAAAGAACCGCTAAAGAAGATACCCTCAACAGCA 3823127 Query 160058 GCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCC 160117 || || || || || | | | |||| | | ||| | || ||| |||| | | ||| Sbjct 3823126 GCGAAGGCAACAAGGCGTTGAGCAAAGGTAGAGTTCTTATCTTGGATCCATTTGATAGCC 3823067 Query 160118 CATTCAGCCTTCTT 160131 || || || ||||| Sbjct 3823066 CAGTCGGCTTTCTT 3823053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795155130423920