Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq1 120 5e-22
>seq1
Length=10671843
Score = 120 bits (132), Expect = 5e-22
Identities = 327/494 (66%), Gaps = 25/494 (5%)
Strand=Plus/Minus
Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708
||||||||| |||||||||||||| ||| ||||| || |||||||| ||||||| ||
Sbjct 3823532 CTTCTCGAAGAAGTTGGTCTTGCCGGCCAATGATATCGACTCCATGAAGTCGAATGGATT 3823473
Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768
|| ||| ||| |||| | |||||||| || | | |||||||| |||||
Sbjct 3823472 TGTCGCGTTGTAGTACTTCTGGTTACCGAGAGCTAGGAGTAGACGATCTGCCACGAATTC 3823413
Query 159769 GATGTA--GCTACACATCTGCTCACAGTTGATCCCCAGC--AGCCTAACGGGGAGCGCTT 159824
|||||| ||| |||| | | ||| || || | | ||| || || || || |
Sbjct 3823412 GATGTATTGCT--TCATCAGACCCGCGTTCATACCTAACAGAGCGCAA--GGTAGAGCCT 3823357
Query 159825 CCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGT 159884
| | || ||||| | ||| || ||| || || || ||| |||| || |
Sbjct 3823356 CTGTCAAGAACTCTTGCTCGATGGTGACGGCCTCAGT---AAT------GACATCTT-GA 3823307
Query 159885 AC-CCCGGCTTGCCCAAAATGTGGTCCTTA------AACAGGAGGCACGCAAAGTCGCAG 159937
|| || |||||| || || | || |||||||| || |||||
Sbjct 3823306 ACAGCCTGCTTGCTTGGTCGGTTGTTGAGATGAGAGAAGAGGAGGCAGGCGAAGTCAGTA 3823247
Query 159938 TGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCA 159997
|| || |||||||| |||||||| | ||||| || | | | || |||||||| | ||
Sbjct 3823246 TGAAGACCCTCGTCGCGAGAGATAAGTTCGTTTGAGAAGGTCAGACCCGGCATAAGACCG 3823187
Query 159998 CGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCC 160057
||| || ||||| || |||| || |||| ||||||||| ||||| ||||| || ||
Sbjct 3823186 CGCTTCTTAAGCCAGAAGATGGAAGCGAAAGAACCGCTAAAGAAGATACCCTCAACAGCA 3823127
Query 160058 GCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCC 160117
|| || || || || | | | |||| | | ||| | || ||| |||| | | |||
Sbjct 3823126 GCGAAGGCAACAAGGCGTTGAGCAAAGGTAGAGTTCTTATCTTGGATCCATTTGATAGCC 3823067
Query 160118 CATTCAGCCTTCTT 160131
|| || || |||||
Sbjct 3823066 CAGTCGGCTTTCTT 3823053
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795155130423920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |