Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq2 140 8e-28
seq6 86.0 1e-11
seq1 84.2 5e-11
>seq2
Length=7009248
Score = 140 bits (154), Expect = 8e-28
Identities = 152/202 (75%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| ||||| ||||| || |||||||| | ||||||||||| || ||| | ||||||
Sbjct 3059159 AGGACGAGGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCAGACAGAGTACGTCCATCC 3059100
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| |||||||| ||||| ||||| | |||||||| || ||| ||| || || |||
Sbjct 3059099 TCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGATCTGGAGGAATGCCCTCCTTGTCC 3059040
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| || |||| ||| || | | ||| || ||||| ||||| |||
Sbjct 3059039 TGGATCTTAGCCTTGACATTGTCGATGGTATCCGAGGATTCCACCTCCAAGGTGATGGTC 3058980
Query 199598 TTACCCGTGAGAGTTTTCACAA 199619
|| || ||||| || |||||||
Sbjct 3058979 TTTCCAGTGAGCGTCTTCACAA 3058958
Score = 125 bits (138), Expect = 2e-23
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|||||||||||||| || ||||| || || | |||||| || | | ||||| |||||
Sbjct 3059387 AGGACAAGGTGGAGGGTTGACTCTTTCTGAATGTTGTAATCGGAAAGTGTCCTCCCATCC 3059328
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| ||||| || ||||||||||| || ||||| || |||||| |||
Sbjct 3059327 TCCAGCTGCTTGCCGGCAAATATGAGACGCTGTTGATCCGGTGGGATGCCTTCTTTATCC 3059268
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| |||||| |||| |||||||| | || || || | || || |||
Sbjct 3059267 TGTATCTTCGACTTCACATTGTCGATGGTGTCTGACGACTCAACTTCGAGGGTAATAGTC 3059208
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || || || || || || || ||
Sbjct 3059207 TTGCCAGTCAGTGTCTTGACGAAGATCTG 3059179
Score = 109 bits (120), Expect = 1e-18
Identities = 138/190 (73%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| | ||| ||||| |||||||| || | ||||||||| | | ||| | || |||
Sbjct 3058876 AGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGATAGAGTACGGCCGTCT 3058817
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| |||||||| || |||||||| | |||||||| ||||| ||| ||||| |||
Sbjct 3058816 TCGAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGATCCGGGGGAATGCCTTCCTTGTCC 3058757
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|||||||| ||| || |||| |||||| | | || || || | ||||| |||
Sbjct 3058756 TGAATCTTGGACTTGACATTATCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGTC 3058697
Query 199598 TTACCCGTGA 199607
|| || ||||
Sbjct 3058696 TTGCCGGTGA 3058687
Score = 109 bits (120), Expect = 1e-18
Identities = 155/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| || || || | || || || |||||| |||| |||||| || | ||| ||
Sbjct 3059852 CGAAGCCTAAGCACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAATCCGACAACGTT 3059793
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||| ||||||||||| || || || || | ||||||||||||||| || ||
Sbjct 3059792 CGGCCATCCTCCAGCTGCTTCCCAGCAAAAATCAAACGCTGCTGGTCCGGCGGGATACCC 3059733
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
||| ||||| ||||| ||| ||| || | ||||| | | || || |||||
Sbjct 3059732 TCTTTGTCCTGGATCTTGCTCTTAACGTTGTCAATCGTGTCGGAACTCTCAACTTCCAAG 3059673
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||||||||| || || || || || ||||| || ||
Sbjct 3059672 GTGATCGTCTTTCCGGTAAGCGTCTTGACAAAGATCTG 3059635
Score = 102 bits (112), Expect = 2e-16
Identities = 136/189 (72%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 199438 CTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAA 199497
||| ||||||| |||||| ||| || |||| || ||||||| |||||| ||||||||
Sbjct 3059595 CTCTTTTTGGATGTTGTAATCACTCAGTGTCCGGCCGTCTTCCAACTGCTTGCCGGCGAA 3059536
Query 199498 GATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGA 199557
||| | ||||| ||||| || || || ||| || || ||||| ||| |||
Sbjct 3059535 GATCAATCGCTGTTGGTCTGGTGGGATACCCTCTTTGTCTTGGATCTTCGACTTGACGTT 3059476
Query 199558 TTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCAC 199617
|||| ||||||| || ||| || |||| ||| || ||||| || || || || || ||
Sbjct 3059475 GTCGATTGTGTCTGATGATTCGACTTCCAGCGTTATTGTCTTCCCAGTAAGCGTCTTTAC 3059416
Query 199618 AAAAATTTG 199626
|| || ||
Sbjct 3059415 GAAGATCTG 3059407
>seq6
Length=2243500
Score = 86.0 bits (94), Expect = 1e-11
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | ||| || ||||||||||| ||||| || |||| ||||||||| | | ||
Sbjct 1182113 CGCAGACGCAGCACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTG 1182172
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518
| |||||||| || ||||| || |||||||| || ||||| ||||| ||
Sbjct 1182173 CGGCCATCTTCGAGTTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCGGG 1182222
>seq1
Length=10671843
Score = 84.2 bits (92), Expect = 5e-11
Identities = 127/181 (70%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499
|||| |||| ||||||||| | | || | ||||| |||| |||||| || || ||||
Sbjct 8978239 CCTTCTGGATGTTGTAGTCGGAAAGTGTACGGCCATCCTCCAACTGCTTGCCCGCAAAGA 8978298
Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559
| | |||||||||||||| || ||||| ||||| || || || || |
Sbjct 8978299 TCAATCGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATTTTGGATTTGACATTGT 8978358
Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619
||| ||||| | | ||| || || | ||||| |||||||||||||| || || || |
Sbjct 8978359 CGATTGTGTCGCTCGATTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGA 8978418
Query 199620 A 199620
|
Sbjct 8978419 A 8978419
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178921494265469
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |