Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq2 122 1e-22 seq1 107 2e-18 seq6 93.3 5e-14 >seq2 Length=7009248 Score = 122 bits (134), Expect = 1e-22 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| |||||||| ||||| |||||||| ||||| || || || || |||| || Sbjct 3059612 ACCAAGTGCAATGTGCTCTCTTTTTGGATGTTGTAATCACTCAGTGTCCGGCCGTCTTCC 3059553 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 | ||||||||||||||| ||||| ||||| ||||| | || | | ||| ||||| | Sbjct 3059552 AACTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGATACCCTCTTTGTCTTGG 3059493 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||||| ||| | | | ||||| ||||| || |||| ||| || || || Sbjct 3059492 ATCTTCGACTTGA-CGTTGTCGATTGTGTCTGATGATTCGACTTCCAGCGTTATTGTCTT 3059434 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || || ||||| || || ||||| |||||| Sbjct 3059433 CCCAGTAAGCGTCTTTACGAAGATCTGCATT 3059403 Score = 120 bits (132), Expect = 3e-22 Identities = 135/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 |||||||| || |||||||| || ||||| || | || || |||||||||||||| || Sbjct 3059138 TCCTTTTGAATGTTGTAGTCAGACAGAGTACGTCCATCCTCAAGCTGCTTGCCGGCAAAG 3059079 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||||||||||||| || | || | || |||||||||| |||||| ||||| | Sbjct 3059078 ATCAAGCGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTG 3059019 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | || || |||||||| |||| |||||||| || || || ||||| || ||| Sbjct 3059018 TCGATGGTATCCGAGGATTCCACCTCCAAGGTGATGGTCTTTCCAGTGAGCGTCTTCACA 3058959 Query 46583 A 46583 | Sbjct 3058958 A 3058958 Score = 118 bits (130), Expect = 1e-21 Identities = 157/214 (73%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||| ||||| || |||||||| ||||| ||||| || || | || || | || || Sbjct 3059841 CACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAATCCGACAACGTTCGGCCATCCTC 3059782 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 |||||||| || || || ||||| ||||||||||| | ||| | | ||| |||||| Sbjct 3059781 CAGCTGCTTCCCAGCAAAAATCAAACGCTGCTGGTCCGGCGGGATACCCTCTTTGTCCTG 3059722 Query 46504 GATCTTCTTCTTGAGCGTCG-CCACCGTGTCG---CTCGATTCCACATCCACCGTGATGG 46559 |||||| |||| | ||| | | | ||||||| ||| || || |||| ||||| | Sbjct 3059721 GATCTTGCTCTT-AACGTTGTCAATCGTGTCGGAACTC---TCAACTTCCAAGGTGATCG 3059666 Query 46560 TTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || || || ||||| || |||||||| ||||| Sbjct 3059665 TCTTTCCGGTAAGCGTCTTGACAAAGATCTGCAT 3059632 Score = 109 bits (120), Expect = 6e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || |||||||| |||||||| || |||| |||||||||||||| ||||| Sbjct 3058856 CTCCTTCTGAATGTTGTAGTCCGATAGAGTACGGCCGTCTTCGAGCTGCTTGCCAGCGAA 3058797 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||||||||||||| || | || | || ||||||||| ||||| ||||| | Sbjct 3058796 GATCAAGCGCTGCTGATCCGGGGGAATGCCTTCCTTGTCCTGAATCTTGGACTTGACATT 3058737 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569 | | ||||| || ||||| || | |||||||| ||||| || Sbjct 3058736 ATCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGTCTTGCCGGT 3058689 >seq1 Length=10671843 Score = 107 bits (118), Expect = 2e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||||| || || || | || || | ||||||||| || || | Sbjct 8978239 CCTTCTGGATGTTGTAGTCGGAAAGTGTACGGCCATCCTCCAACTGCTTGCCCGCAAAGA 8978298 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 |||| ||||||||||| | || | || ||||||||| ||| || |||| | Sbjct 8978299 TCAATCGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATTTTGGATTTGACATTGT 8978358 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | |||||||||||||| || || | |||||||| || ||||| || || || || | Sbjct 8978359 CGATTGTGTCGCTCGATTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGA 8978418 Query 46584 AG 46585 || Sbjct 8978419 AG 8978420 >seq6 Length=2243500 Score = 93.3 bits (102), Expect = 5e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| |||||| || | || ||| || ||||| ||||||||||| || ||||| | Sbjct 1182118 ACGCAGCACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCC 1182177 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || ||||| |||||||| ||||| |||| |||||| ||||||| || | | ||||| Sbjct 1182178 ATCTTCGAGTTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCGGGTGGGATACCTTCCTT 1182237 Query 46498 GTCCATGAT 46506 ||| |||| Sbjct 1182238 GTCTGTGAT 1182246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565238350541640