Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_013797.1
Length=108592
Score E
Sequences producing significant alignments: (Bits) Value
seq2 89.7 4e-13
>seq2
Length=7009248
Score = 89.7 bits (98), Expect = 4e-13
Identities = 149/213 (70%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567
|| |||||||||| ||||| || || || || || ||||| | ||| || ||||
Sbjct 3059843 AGCACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAATCCGACAACGTTCGGCCATCC 3059784
Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627
|||| || ||||| ||||||| ||||||||||| |||| || | || ||||||||
Sbjct 3059783 TCCAGCTGCTTCCCAGCAAAAATCAAACGCTGCTGGTCCGGCGGGATACCCTCTTTGTCC 3059724
Query 39628 CATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGT 39686
|| || |||| ||| | | | ||||| | || || || ||||| || || ||
Sbjct 3059723 TGGATCTTGCTCTTAA-CGTTGTCAATCGTGTCGGAACTCTCAACTTCCAAGGTGATCGT 3059665
Query 39687 TTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| || || | || || || |||||||||||
Sbjct 3059664 CTTTCCGGTAAGCGTCTTGACAAAGATCTGCAT 3059632
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || |||| ||| || ||||| ||||| ||||| |||||||| || || ||||| |
Sbjct 3059630 CCACCGCGCAGACGAAGAACCAAGTGCAATGTGCTCTCTTTTTGGATGTTGTAATCACTC 3059571
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
| || | || ||||| || || ||| | || || || ||||| || || | ||
Sbjct 3059570 AGTGTCCGGCCGTCTTCCAACTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGG 3059511
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671
| || |||||||| || || || | ||| | | | |||||||| ||| ||
Sbjct 3059510 ATACCCTCTTTGTCTTGGATCTTCGACTTGA-CGTTGTCGATTGTGTCTGATGATTCGAC 3059452
Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|||| || ||||| || || || | || |||||||||||||||||
Sbjct 3059451 TTCCAGCGTTATTGTCTTCCCAGTAAGCGTCTTTACGAAGATCTGCAT 3059404
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 347369570365031
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |