Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1 111 2e-19 seq2 100 3e-16 seq6 93.3 4e-14 >seq1 Length=10671843 Score = 111 bits (122), Expect = 2e-19 Identities = 190/275 (69%), Gaps = 3/275 (1%) Strand=Plus/Minus Query 133168 TAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAG 133227 || ||||||||||| || || | || ||||| | ||||||||| ||| || || Sbjct 3822938 TATGTGTCGATGAGAAGGGAGTAAGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAA 3822879 Query 133228 CCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTT 133287 ||||| ||||| || ||||| | || ||||| | ||| ||||| || || || Sbjct 3822878 CCGTAGAAGCATCGTGCCTCAGGTATTTGAACTTCGCCACTGAAGCGCTCAACTAGGTTC 3822819 Query 133288 TCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGC 133347 ||||||||||| || || || || |||||||| || ||||| ||||| | ||| Sbjct 3822818 TCGTTGACGATACCATCTGATGCAGCAAAAAAGGCGAGGACGTGGGAAATGAAGTAGCGT 3822759 Query 133348 TCGTTGTCGTTCA---AGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCG 133404 |||| |||||| | | | ||| ||| || || || || ||||| | ||| || Sbjct 3822758 TCGTCGTCGTTGAGTCTGTTGTTCCAATCGTGCAAATCTTTCGAGAGGTCGATCTCTTCC 3822699 Query 133405 ACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 ||||||| || || || || || || |||||||| Sbjct 3822698 GCGGTCCAGAATGATGCTTCAGCCTTCTTGTACAT 3822664 Score = 93.3 bits (102), Expect = 4e-14 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || |||||||| || ||||||||| |||| ||||| | | ||||| | Sbjct 8978419 TTCGTCAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTCGAATCGAGCGACACAATC 8978360 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | ||| ||||||| ||||| || || || || | ||||| ||||| | Sbjct 8978359 GACAATGTCAAATCCAAAATCCAGGACAAGGAAGGCATCCCACCGGACCAGCAGCGATTG 8978300 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | |||||||| ||| |||| || | || || || ||||||||||||||| ||| Sbjct 8978299 ATCTTTGCGGGCAAGCAGTTGGAGGATGGCCGTACACTTTCCGACTACAACATCCAGAAG 8978240 Query 38433 G 38433 | Sbjct 8978239 G 8978239 >seq2 Length=7009248 Score = 100 bits (110), Expect = 3e-16 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || ||||| || || || || |||||| | || || ||| || Sbjct 3059632 ATGCAGATCTTTGTCAAGACGCTTACCGGAAAGACGATCACCTTGGAAGTTGAGAGTTCC 3059691 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 |||| | || |||| | | || || | ||| ||||||||||| | ||||||| |||| Sbjct 3059692 GACACGATTGACAACGTTAAGAGCAAGA-TCCAGGACAAAGAGGGTA-TCCCGCCGGACC 3059749 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| | |||| || || || |||||||| || | || || | || |||| Sbjct 3059750 AGCAGCGTTTGATTTTTGCTGGGAAGCAGCTGGAGGATGGCCGAACGTTGTCGGATTACA 3059809 Query 38422 ACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCT 38455 ||||||| ||||| ||| || |||||||||||||| Sbjct 3059810 ACATCCAGAAGGAGAGC-ACCCTGCATTTGGTGCT 3059843 Score = 98.7 bits (108), Expect = 1e-15 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || |||||||| ||||| || || || || || || | || ||||| | | Sbjct 3059403 AATGCAGATCTTCGTAAAGACGCTTACTGGGAAGACAATAACGCTGGAAGTCGAATCATC 3059462 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | |||| | || || |||| ||||||||||| || || | |||| Sbjct 3059463 AGACACAATCGACAACG-TCAAGTCGAAGATCCAAGACAAAGAGGGTATCCCACCAGACC 3059521 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| | || | ||| ||||| ||| |||| |||| || || || | || |||| Sbjct 3059522 AACAGCGATTGATCTTCGCCGGCAAGCAGTTGGAAGACGGCCGGACACTGAGTGATTACA 3059581 Query 38422 ACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||| || ||| || |||| ||||| || ||| || | || || Sbjct 3059582 ACATCCAAAAAGAGAGC-ACATTGCACTTGGTTCTTCGTCTGCGCGGTGG 3059630 >seq6 Length=2243500 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| || || || || ||||||||||||| || || | ||| ||||| || || || Sbjct 1182240 GACAAGGAAGGTATCCCACCCGACCAACAGCGCCTGATCTTCGCTGGCAAGCAACTCGAA 1182181 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 || | ||||||||| ||||||||||||||| || || | || || || |||||||| Sbjct 1182180 GATGGCCGCACCCTCTCCGACTACAACATCCAGAAAGAGTCCACTCTCCACCTGGTGCTG 1182121 Query 38457 CGTTTGAGAGGCGG 38470 ||| || | || || Sbjct 1182120 CGTCTGCGTGGTGG 1182107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172756234880