Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq1 111 2e-19
seq2 100 3e-16
seq6 93.3 4e-14
>seq1
Length=10671843
Score = 111 bits (122), Expect = 2e-19
Identities = 190/275 (69%), Gaps = 3/275 (1%)
Strand=Plus/Minus
Query 133168 TAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAG 133227
|| ||||||||||| || || | || ||||| | ||||||||| ||| || ||
Sbjct 3822938 TATGTGTCGATGAGAAGGGAGTAAGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAA 3822879
Query 133228 CCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTT 133287
||||| ||||| || ||||| | || ||||| | ||| ||||| || || ||
Sbjct 3822878 CCGTAGAAGCATCGTGCCTCAGGTATTTGAACTTCGCCACTGAAGCGCTCAACTAGGTTC 3822819
Query 133288 TCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGC 133347
||||||||||| || || || || |||||||| || ||||| ||||| | |||
Sbjct 3822818 TCGTTGACGATACCATCTGATGCAGCAAAAAAGGCGAGGACGTGGGAAATGAAGTAGCGT 3822759
Query 133348 TCGTTGTCGTTCA---AGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCG 133404
|||| |||||| | | | ||| ||| || || || || ||||| | ||| ||
Sbjct 3822758 TCGTCGTCGTTGAGTCTGTTGTTCCAATCGTGCAAATCTTTCGAGAGGTCGATCTCTTCC 3822699
Query 133405 ACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
||||||| || || || || || || ||||||||
Sbjct 3822698 GCGGTCCAGAATGATGCTTCAGCCTTCTTGTACAT 3822664
Score = 93.3 bits (102), Expect = 4e-14
Identities = 129/181 (71%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || |||||||| || ||||||||| |||| ||||| | | ||||| |
Sbjct 8978419 TTCGTCAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTCGAATCGAGCGACACAATC 8978360
Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| | | ||| ||||||| ||||| || || || || | ||||| ||||| |
Sbjct 8978359 GACAATGTCAAATCCAAAATCCAGGACAAGGAAGGCATCCCACCGGACCAGCAGCGATTG 8978300
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|| | |||||||| ||| |||| || | || || || ||||||||||||||| |||
Sbjct 8978299 ATCTTTGCGGGCAAGCAGTTGGAGGATGGCCGTACACTTTCCGACTACAACATCCAGAAG 8978240
Query 38433 G 38433
|
Sbjct 8978239 G 8978239
>seq2
Length=7009248
Score = 100 bits (110), Expect = 3e-16
Identities = 156/215 (73%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || ||||| || || || || |||||| | || || ||| ||
Sbjct 3059632 ATGCAGATCTTTGTCAAGACGCTTACCGGAAAGACGATCACCTTGGAAGTTGAGAGTTCC 3059691
Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361
|||| | || |||| | | || || | ||| ||||||||||| | ||||||| ||||
Sbjct 3059692 GACACGATTGACAACGTTAAGAGCAAGA-TCCAGGACAAAGAGGGTA-TCCCGCCGGACC 3059749
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
| ||||| | |||| || || || |||||||| || | || || | || ||||
Sbjct 3059750 AGCAGCGTTTGATTTTTGCTGGGAAGCAGCTGGAGGATGGCCGAACGTTGTCGGATTACA 3059809
Query 38422 ACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCT 38455
||||||| ||||| ||| || ||||||||||||||
Sbjct 3059810 ACATCCAGAAGGAGAGC-ACCCTGCATTTGGTGCT 3059843
Score = 98.7 bits (108), Expect = 1e-15
Identities = 163/230 (71%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302
|||||| || |||||||| ||||| || || || || || || | || ||||| | |
Sbjct 3059403 AATGCAGATCTTCGTAAAGACGCTTACTGGGAAGACAATAACGCTGGAAGTCGAATCATC 3059462
Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
|||| | | |||| | || || |||| ||||||||||| || || | ||||
Sbjct 3059463 AGACACAATCGACAACG-TCAAGTCGAAGATCCAAGACAAAGAGGGTATCCCACCAGACC 3059521
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
||||||| | || | ||| ||||| ||| |||| |||| || || || | || ||||
Sbjct 3059522 AACAGCGATTGATCTTCGCCGGCAAGCAGTTGGAAGACGGCCGGACACTGAGTGATTACA 3059581
Query 38422 ACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||||||| || ||| || |||| ||||| || ||| || | || ||
Sbjct 3059582 ACATCCAAAAAGAGAGC-ACATTGCACTTGGTTCTTCGTCTGCGCGGTGG 3059630
>seq6
Length=2243500
Score = 93.3 bits (102), Expect = 4e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396
||||| || || || || ||||||||||||| || || | ||| ||||| || || ||
Sbjct 1182240 GACAAGGAAGGTATCCCACCCGACCAACAGCGCCTGATCTTCGCTGGCAAGCAACTCGAA 1182181
Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456
|| | ||||||||| ||||||||||||||| || || | || || || ||||||||
Sbjct 1182180 GATGGCCGCACCCTCTCCGACTACAACATCCAGAAAGAGTCCACTCTCCACCTGGTGCTG 1182121
Query 38457 CGTTTGAGAGGCGG 38470
||| || | || ||
Sbjct 1182120 CGTCTGCGTGGTGG 1182107
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500172756234880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |