Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1 446 2e-120 seq3 149 8e-31 seq5 140 4e-28 >seq1 Length=10671843 Score = 446 bits (494), Expect = 2e-120 Identities = 765/1109 (69%), Gaps = 6/1109 (1%) Strand=Plus/Plus Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069 ||||| | | ||||||||| ||||| | || ||||||||||| |||||||||||||| Sbjct 5944549 TCACCGGAGAGGATGGCGGCCTGGACGGCGGCACCGTATGCGACAGCCTCATCGGGGTTG 5944608 Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129 || | | || | || || ||||| || | || || | | | || || || || Sbjct 5944609 ATTGACCTGTTGGGCTCCTTGCCGTTGAAGAAGTCGGAAACAAGCTTCTGGATCTTGGGA 5944668 Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189 || || || || ||||||||||| ||||| || | || || || |||||||| | | Sbjct 5944669 ATACGGGTGGAACCACCGACCAAGACGATCTCGTGGACGGAGGACTTGTCGATCTTGGCG 5944728 Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCC 7249 || ||||| || ||||| ||||| ||||||| |||| || || ||| Sbjct 5944729 TCACGAAGGACACGCTCAACAGGCTCCATGGTGGAGCGGAACAGGTCCTGGCAAAGCTCC 5944788 Query 7250 TCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATT 7309 || ||||| |||||||| ||||| || ||||| || | || ||||||| || || ||| Sbjct 5944789 TCGAAACGGGCACGGGTGATGGAGGTGTAGAAGTCGATACCTTCGTATAGGGAGTCGATT 5944848 Query 7310 TCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGT 7369 ||||| | |||||||||| || || | || || || || ||||| || || ||||| Sbjct 5944849 TCAATCGAGGTTTGTGCCGATGATGAGAGAGTGCGTTTGGCCCGCTCGCAAGCTGTTCGG 5944908 Query 7370 AAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCT 7429 | |||||| || ||||| | ||| ||||| ||| ||||| || || || || ||||| Sbjct 5944909 AGACGACGCAGAGCACGAGCGTTGGTGGAAAGATCCTTCTTGTGCTTGCGCTTGAACTCG 5944968 Query 7430 TCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCC 7489 | |||||| | || | ||||| || ||||| ||||| || || || || Sbjct 5944969 TTGACGAAGTGGTTCACCAGGCGGTTGTCGAAGTCCTCACCGCCCAAATGCGTGTCACCG 5945028 Query 7490 GCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTA 7549 || |||| ||||| || || ||||| | || ||| | || | || ||||| || || Sbjct 5945029 GCAGTCGACTTGACCTCGAAAATACCCTCCTCGATGGTCAAGAGTGAGACATCGAAGGTT 5945088 Query 7550 CCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCG 7609 |||||||||| ||| || ||||| || || ||| | || | ||||| || |||||| Sbjct 5945089 CCACCACCCAAGTCGAATATGAGAACATTGCGCTCGCCCTCAGTTTTCTTGTCAAGACCG 5945148 Query 7610 TACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATA 7669 || || ||||| || || || || || || |||||||| || ||| || ||||| || Sbjct 5945149 TAGGCAATAGCAGCGGCGGTGGGCTCGTTGATAATACGTAGGACGTTTAGACCAGCGATC 5945208 Query 7670 GTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACG 7729 | ||||| || || ||||| || || || ||||| |||||||| ||||| || ||| Sbjct 5945209 AGACCAGCATCCTTTGTTGCTTGGCGCTGGGAGTCGTTGAAGTAGGCGGGGACAGTGACG 5945268 Query 7730 ACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGA 7789 || |||| |||| | ||| | || || || ||| | || |||| ||||| | Sbjct 5945269 ACGGCGTTGTTGACGGTGCCACCCAAGTATGACTCGGCGGTCTCCCTCATCTTGGTCAAG 5945328 Query 7790 ACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCA 7849 ||||| ||||| |||||||| | | ||| || || || || || || || || | Sbjct 5945329 ACCATTGATGAGATCTCTTCTGGTGTAAATGACTTGGTCTCGCCCTTGAACTCGACCTGG 5945388 Query 7850 ATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCT 7909 |||| || || | |||| | || || ||| ||| ||||| ||| | Sbjct 5945389 ATCACTGGCTT---CCCAGCCTTCTCTACGACTTTGAACGGGAAATGCTTCATGTCGGCC 5945445 Query 7910 TGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTT 7969 || |||| || | || || | ||||| |||||||| ||||| || ||||||||| Sbjct 5945446 TGCACCTCAGCATCGGCGAATTTACGACCGATGAGACGCTTGGCATCGAAGACTGTGTTT 5945505 Query 7970 TTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCC 8029 | ||||||||||| |||||||| || | ||| ||||| ||||| || | || Sbjct 5945506 GTCGGGTTCATGGCGACCTGGTTCTTGGCTGAGTCGCCGATGAGACGCTC---GGTGTCG 5945562 Query 8030 GTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACG 8089 || || || ||| |||| |||||||| || || || |||||||| ||||| ||||| | | Sbjct 5945563 GTGAAAGCAACGAACGACGGGGTCGTCCGGTTGCCCTGGTCGTTGGCAATGATTTCAATG 5945622 Query 8090 CGGTCGTTTTGCCAGACGCCGACGCACGA 8118 ||||| | | ||| || |||||||| Sbjct 5945623 CGGTCATCGCGGAAGATACCAACGCACGA 5945651 >seq3 Length=5817774 Score = 149 bits (164), Expect = 8e-31 Identities = 361/544 (66%), Gaps = 7/544 (1%) Strand=Plus/Minus Query 7244 AGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303 || |||||||| || |||||||| || | | ||| || |||| ||| | | || Sbjct 252826 AGGTCCTCAAATCGGGCACGGGTGATTTGAGCGTTGAAGTCCTCGCCATCGAAGAGAGAG 252767 Query 7304 TCAATTTCAATGGTTGTTTGTG--CCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361 || || || | || ||||| | || | | |||| ||| ||||| || |||||||| | Sbjct 252766 TCGATCTCGACAGTAGTTTGAGTACCATTG--GATAGCGTACGCTTAGCACGCTCACAAG 252709 Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTT 7421 |||| || | ||| || || ||||| || | || || || |||||||| || || | Sbjct 252708 CCGTCCGAAGACGTCGTAGAGCACGTGGATCGCCCGACATGTCTTTCTTGGTCTTGCGCT 252649 Query 7422 TAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTG 7481 || || | |||||| ||| || | | ||||| || | ||||||||||| | Sbjct 252648 GGAATTCCTTCTTGAAGTGCTCAAGCAGGTTTGTGTCGAAGTCCTGGCCACCCAAGTGAG 252589 Query 7482 TATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACAT 7541 | || || || || || ||||| ||||| ||| || | || | || | || |||| Sbjct 252588 TGTCACCAGCAGTAGCCTTGACGGTAAAGACACCGCCCTGGATATGCAAAAGAGAGACAT 252529 Query 7542 CAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCT---TTGTTCT 7598 | || || || ||||| || || | || || || || || | ||| ||| Sbjct 252528 CGAAAGTTCCTCCACCGAGATCGTAGATCAGAACATTTCGCTCCTTCTCTGACTTGCCAG 252469 Query 7599 TATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCA 7658 | ||||||||||| || || || || |||||||| || ||||| || || | || Sbjct 252468 ACCCTAGACCGTACGCAATCGCGGCAGCGGTTGGTTCGTTGATAATCCGGAGGACTTGCA 252409 Query 7659 GGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCG 7718 | ||||||| | | || ||||| || || || ||||| ||||| ||||| || | Sbjct 252408 GATCAGCAATGGCACCAGCGTCTTTTGTTGCCTGACGTTGGTTGTCGTTGAAGTAAGCTG 252349 Query 7719 GGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCA 7778 | || || | ||| || | | |||| ||||| || || | || || || | ||||||| Sbjct 252348 GTACAGTGATGACGGCCTTCTTGACCTTCTTTCCAAGTTTCGTCTCTGCAACCTCTTTCA 252289 Query 7779 TTTT 7782 | || Sbjct 252288 TCTT 252285 >seq5 Length=2817054 Score = 140 bits (154), Expect = 4e-28 Identities = 254/366 (69%), Gaps = 7/366 (2%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||||||||| || || |||||||| || || || || || || |||| ||||| | ||| Sbjct 1478241 ATCGAAATCCTCTCCTCCCAAGTGGGTGTCACCAGCTGTTGCCATGACCTCAAAAACACC 1478182 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 || ||| | | |||||||| || ||||| ||||||| |||| | | || | Sbjct 1478181 GTTGTCGATGGAGAGGAGAGAAACATCGAAAGTACCTCCACCCAAGTCATACACGATAA- 1478123 Query 7576 GTTCGTATCG-TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634 || | || || || ||||| || |||||||||||||| || ||||| || || | Sbjct 1478122 --TC-TGGCGCTCTTCACCCTTCTTGTCCAGACCGTACGCGATCGCGGCCGCGGTGGGCT 1478066 Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCC-GCATCTTTCGTCGCTTGT 7693 | || | || |||||| ||||| ||||| || | ||| || || || || ||||| Sbjct 1478065 CGTTGACAACGCGAAGAACGTTCAAACCAGCGAT-GACGCCAGCGTCCTTTGTAGCTTGC 1478007 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753 | || ||||| ||||| || |||||||| || || |||| ||| ||||| || Sbjct 1478006 CTCTGGTTGTCGTTGAAGTATGCTGGGACCGTGACAACGGCGTGATCGACCTTCTTTCCT 1477947 Query 7754 AGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCC 7813 ||||| || ||||| || ||||| || ||| ||||| | |||| ||||| | | Sbjct 1477946 AGATAGCTCTCGGCGATCTCCTTCATCTTCCCAAGGACCATGGCGGAAACTTCTTCGGGC 1477887 Query 7814 GCAAAC 7819 | |||| Sbjct 1477886 GTAAAC 1477881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132744425880