Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq1 446 2e-120
seq3 149 8e-31
seq5 140 4e-28
>seq1
Length=10671843
Score = 446 bits (494), Expect = 2e-120
Identities = 765/1109 (69%), Gaps = 6/1109 (1%)
Strand=Plus/Plus
Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069
||||| | | ||||||||| ||||| | || ||||||||||| ||||||||||||||
Sbjct 5944549 TCACCGGAGAGGATGGCGGCCTGGACGGCGGCACCGTATGCGACAGCCTCATCGGGGTTG 5944608
Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129
|| | | || | || || ||||| || | || || | | | || || || ||
Sbjct 5944609 ATTGACCTGTTGGGCTCCTTGCCGTTGAAGAAGTCGGAAACAAGCTTCTGGATCTTGGGA 5944668
Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189
|| || || || ||||||||||| ||||| || | || || || |||||||| | |
Sbjct 5944669 ATACGGGTGGAACCACCGACCAAGACGATCTCGTGGACGGAGGACTTGTCGATCTTGGCG 5944728
Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCC 7249
|| ||||| || ||||| ||||| ||||||| |||| || || |||
Sbjct 5944729 TCACGAAGGACACGCTCAACAGGCTCCATGGTGGAGCGGAACAGGTCCTGGCAAAGCTCC 5944788
Query 7250 TCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATT 7309
|| ||||| |||||||| ||||| || ||||| || | || ||||||| || || |||
Sbjct 5944789 TCGAAACGGGCACGGGTGATGGAGGTGTAGAAGTCGATACCTTCGTATAGGGAGTCGATT 5944848
Query 7310 TCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGT 7369
||||| | |||||||||| || || | || || || || ||||| || || |||||
Sbjct 5944849 TCAATCGAGGTTTGTGCCGATGATGAGAGAGTGCGTTTGGCCCGCTCGCAAGCTGTTCGG 5944908
Query 7370 AAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCT 7429
| |||||| || ||||| | ||| ||||| ||| ||||| || || || || |||||
Sbjct 5944909 AGACGACGCAGAGCACGAGCGTTGGTGGAAAGATCCTTCTTGTGCTTGCGCTTGAACTCG 5944968
Query 7430 TCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCC 7489
| |||||| | || | ||||| || ||||| ||||| || || || ||
Sbjct 5944969 TTGACGAAGTGGTTCACCAGGCGGTTGTCGAAGTCCTCACCGCCCAAATGCGTGTCACCG 5945028
Query 7490 GCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTA 7549
|| |||| ||||| || || ||||| | || ||| | || | || ||||| || ||
Sbjct 5945029 GCAGTCGACTTGACCTCGAAAATACCCTCCTCGATGGTCAAGAGTGAGACATCGAAGGTT 5945088
Query 7550 CCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCG 7609
|||||||||| ||| || ||||| || || ||| | || | ||||| || ||||||
Sbjct 5945089 CCACCACCCAAGTCGAATATGAGAACATTGCGCTCGCCCTCAGTTTTCTTGTCAAGACCG 5945148
Query 7610 TACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATA 7669
|| || ||||| || || || || || || |||||||| || ||| || ||||| ||
Sbjct 5945149 TAGGCAATAGCAGCGGCGGTGGGCTCGTTGATAATACGTAGGACGTTTAGACCAGCGATC 5945208
Query 7670 GTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACG 7729
| ||||| || || ||||| || || || ||||| |||||||| ||||| || |||
Sbjct 5945209 AGACCAGCATCCTTTGTTGCTTGGCGCTGGGAGTCGTTGAAGTAGGCGGGGACAGTGACG 5945268
Query 7730 ACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGA 7789
|| |||| |||| | ||| | || || || ||| | || |||| ||||| |
Sbjct 5945269 ACGGCGTTGTTGACGGTGCCACCCAAGTATGACTCGGCGGTCTCCCTCATCTTGGTCAAG 5945328
Query 7790 ACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCA 7849
||||| ||||| |||||||| | | ||| || || || || || || || || |
Sbjct 5945329 ACCATTGATGAGATCTCTTCTGGTGTAAATGACTTGGTCTCGCCCTTGAACTCGACCTGG 5945388
Query 7850 ATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCT 7909
|||| || || | |||| | || || ||| ||| ||||| ||| |
Sbjct 5945389 ATCACTGGCTT---CCCAGCCTTCTCTACGACTTTGAACGGGAAATGCTTCATGTCGGCC 5945445
Query 7910 TGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTT 7969
|| |||| || | || || | ||||| |||||||| ||||| || |||||||||
Sbjct 5945446 TGCACCTCAGCATCGGCGAATTTACGACCGATGAGACGCTTGGCATCGAAGACTGTGTTT 5945505
Query 7970 TTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCC 8029
| ||||||||||| |||||||| || | ||| ||||| ||||| || | ||
Sbjct 5945506 GTCGGGTTCATGGCGACCTGGTTCTTGGCTGAGTCGCCGATGAGACGCTC---GGTGTCG 5945562
Query 8030 GTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACG 8089
|| || || ||| |||| |||||||| || || || |||||||| ||||| ||||| | |
Sbjct 5945563 GTGAAAGCAACGAACGACGGGGTCGTCCGGTTGCCCTGGTCGTTGGCAATGATTTCAATG 5945622
Query 8090 CGGTCGTTTTGCCAGACGCCGACGCACGA 8118
||||| | | ||| || ||||||||
Sbjct 5945623 CGGTCATCGCGGAAGATACCAACGCACGA 5945651
>seq3
Length=5817774
Score = 149 bits (164), Expect = 8e-31
Identities = 361/544 (66%), Gaps = 7/544 (1%)
Strand=Plus/Minus
Query 7244 AGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303
|| |||||||| || |||||||| || | | ||| || |||| ||| | | ||
Sbjct 252826 AGGTCCTCAAATCGGGCACGGGTGATTTGAGCGTTGAAGTCCTCGCCATCGAAGAGAGAG 252767
Query 7304 TCAATTTCAATGGTTGTTTGTG--CCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361
|| || || | || ||||| | || | | |||| ||| ||||| || |||||||| |
Sbjct 252766 TCGATCTCGACAGTAGTTTGAGTACCATTG--GATAGCGTACGCTTAGCACGCTCACAAG 252709
Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTT 7421
|||| || | ||| || || ||||| || | || || || |||||||| || || |
Sbjct 252708 CCGTCCGAAGACGTCGTAGAGCACGTGGATCGCCCGACATGTCTTTCTTGGTCTTGCGCT 252649
Query 7422 TAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTG 7481
|| || | |||||| ||| || | | ||||| || | ||||||||||| |
Sbjct 252648 GGAATTCCTTCTTGAAGTGCTCAAGCAGGTTTGTGTCGAAGTCCTGGCCACCCAAGTGAG 252589
Query 7482 TATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACAT 7541
| || || || || || ||||| ||||| ||| || | || | || | || ||||
Sbjct 252588 TGTCACCAGCAGTAGCCTTGACGGTAAAGACACCGCCCTGGATATGCAAAAGAGAGACAT 252529
Query 7542 CAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCT---TTGTTCT 7598
| || || || ||||| || || | || || || || || | ||| |||
Sbjct 252528 CGAAAGTTCCTCCACCGAGATCGTAGATCAGAACATTTCGCTCCTTCTCTGACTTGCCAG 252469
Query 7599 TATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCA 7658
| ||||||||||| || || || || |||||||| || ||||| || || | ||
Sbjct 252468 ACCCTAGACCGTACGCAATCGCGGCAGCGGTTGGTTCGTTGATAATCCGGAGGACTTGCA 252409
Query 7659 GGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCG 7718
| ||||||| | | || ||||| || || || ||||| ||||| ||||| || |
Sbjct 252408 GATCAGCAATGGCACCAGCGTCTTTTGTTGCCTGACGTTGGTTGTCGTTGAAGTAAGCTG 252349
Query 7719 GGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCA 7778
| || || | ||| || | | |||| ||||| || || | || || || | |||||||
Sbjct 252348 GTACAGTGATGACGGCCTTCTTGACCTTCTTTCCAAGTTTCGTCTCTGCAACCTCTTTCA 252289
Query 7779 TTTT 7782
| ||
Sbjct 252288 TCTT 252285
>seq5
Length=2817054
Score = 140 bits (154), Expect = 4e-28
Identities = 254/366 (69%), Gaps = 7/366 (2%)
Strand=Plus/Minus
Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515
||||||||| || || |||||||| || || || || || || |||| ||||| | |||
Sbjct 1478241 ATCGAAATCCTCTCCTCCCAAGTGGGTGTCACCAGCTGTTGCCATGACCTCAAAAACACC 1478182
Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575
|| ||| | | |||||||| || ||||| ||||||| |||| | | || |
Sbjct 1478181 GTTGTCGATGGAGAGGAGAGAAACATCGAAAGTACCTCCACCCAAGTCATACACGATAA- 1478123
Query 7576 GTTCGTATCG-TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634
|| | || || || ||||| || |||||||||||||| || ||||| || || |
Sbjct 1478122 --TC-TGGCGCTCTTCACCCTTCTTGTCCAGACCGTACGCGATCGCGGCCGCGGTGGGCT 1478066
Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCC-GCATCTTTCGTCGCTTGT 7693
| || | || |||||| ||||| ||||| || | ||| || || || || |||||
Sbjct 1478065 CGTTGACAACGCGAAGAACGTTCAAACCAGCGAT-GACGCCAGCGTCCTTTGTAGCTTGC 1478007
Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753
| || ||||| ||||| || |||||||| || || |||| ||| ||||| ||
Sbjct 1478006 CTCTGGTTGTCGTTGAAGTATGCTGGGACCGTGACAACGGCGTGATCGACCTTCTTTCCT 1477947
Query 7754 AGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCC 7813
||||| || ||||| || ||||| || ||| ||||| | |||| ||||| | |
Sbjct 1477946 AGATAGCTCTCGGCGATCTCCTTCATCTTCCCAAGGACCATGGCGGAAACTTCTTCGGGC 1477887
Query 7814 GCAAAC 7819
| ||||
Sbjct 1477886 GTAAAC 1477881
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635132744425880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |