Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq3 167 3e-36 seq1 129 7e-25 >seq3 Length=5817774 Score = 167 bits (184), Expect = 3e-36 Identities = 409/615 (67%), Gaps = 19/615 (3%) Strand=Plus/Minus Query 111619 ACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTTTTGGAGA 111678 ||||| | ||||| || || | || || || || |||||||| || | |||| Sbjct 3752114 ACATGATAATGCGTGTTGCTGTTGGCATTTGGGGCGATGATATTGAGAAGGTCCTCGAGA 3752055 Query 111679 CATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCTTCAACGCT 111737 | || || ||||||| | ||| |||| ||||| | ||||| |||||||| ||| Sbjct 3752054 CCTATAACCTCATGTCCCAGAAGTAC-TTCACACACGCCTCGCCAACTCTCTTCAATGCT 3751996 Query 111738 GGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGATTCAATC 111797 ||||| || ||| || ||| | ||||||||| || | | || ||||| || Sbjct 3751995 GGTACCCCGCAACCGCAGATGGCGTCTTGTTTCCTCATCGACATGAAAGAGGACAGCATT 3751936 Query 111798 AATGGCATTTACGGCACTCTCACTGAA----TGTGCCCAAATCTCAAAGTGGGCTGGTGG 111853 | || ||||||| || || |||| |||||| || || ||| ||| || || Sbjct 3751935 GAGGGTATTTACGATAC-CT---TGAAGACCTGTGCCTTGATTTCGAAGACGGCGGGAGG 3751880 Query 111854 TATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAATGG 111913 |||||| || || | ||| | ||||||||| | ||| ||| || |||||||| Sbjct 3751879 CATCGGGCTGAACGTACATCGTATCAGAGCCACCGGCTCTTACATTGCCGGCACAAATGG 3751820 Query 111914 TCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAA 111973 || | || || | || ||||| ||||| || || ||| || | ||||| | Sbjct 3751819 ATCTTCCAACGGGATCGTGCCTATGCTCCGCGTCTTCAATAACACCGCAAGATATGTCGA 3751760 Query 111974 CCAAGCTGGGCGTCGCAAG------GGATCTATCGCAGTCTATCTTGAGCCATGGCACGC 112027 ||||| || | |||| || | |||| ||||| |||||||| |||||||| Sbjct 3751759 CCAAGGAGG---TAACAAGCGGCCAGGTGCGTTCGCCGTCTACCTTGAGCCCTGGCACGC 3751703 Query 112028 GGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCG 112087 ||| || | |||||| | || ||||| || || || | ||||| | || ||| Sbjct 3751702 CGATGTCTTCGAGTTCTTGGACTTGCGCAAGAATCACGGCAAGGAGGAAGTCCGCGCCCG 3751643 Query 112088 CGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGG 112147 || ||||||| ||||| |||| |||||||||||||||||| | || ||| ||| || Sbjct 3751642 TGACCTCTTCTTAGCTCTTTGGACCCCAGATCTCTTCATGAAGCGTGTCGAGAAGAATGC 3751583 Query 112148 CAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGA 112207 | | ||| | || ||||| || | | || || || || | || | ||||| || Sbjct 3751582 CGAATGGACGCTGTTTTGCCCCAATGAAGCTCCGGGCCTGGCTGACGTATACGGTGACGA 3751523 Query 112208 GTTTGAAGCCCTCTA 112222 |||||| |||||||| Sbjct 3751522 GTTTGAGGCCCTCTA 3751508 >seq1 Length=10671843 Score = 129 bits (142), Expect = 7e-25 Identities = 157/213 (74%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 102110 AGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAGTC 102166 |||||| ||||| | |||||||| || |||||||| || ||| | |||| || || Sbjct 3823037 AGTTCCTTGTATCCGCAAGAAAGCCGACTGGGCTATCAAATGGATCCAAGATAAGAACTC 3823096 Query 102167 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 102226 | |||||||| | || || | || || || |||||||||||||||||| || Sbjct 3823097 ---TACCTTTGCTCAACGCCTTGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTTAGCGG 3823153 Query 102227 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 102286 ||| ||| | || | ||||| |||||||| ||||| ||||| ||||| |||||| Sbjct 3823154 TTCTTTCGCTTCCATCTTCTGGCTTAAGAAGCGCGGTCTTATGCCGGGTCTGACCTTCTC 3823213 Query 102287 CAACGAGCTTATCTCTCGTGACGAGGGACTCCA 102319 ||||| ||||||||||| |||||||| || || Sbjct 3823214 AAACGAACTTATCTCTCGCGACGAGGGTCTTCA 3823246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742345685040