Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq3 167 3e-36
seq1 129 7e-25
>seq3
Length=5817774
Score = 167 bits (184), Expect = 3e-36
Identities = 409/615 (67%), Gaps = 19/615 (3%)
Strand=Plus/Minus
Query 111619 ACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTTTTGGAGA 111678
||||| | ||||| || || | || || || || |||||||| || | ||||
Sbjct 3752114 ACATGATAATGCGTGTTGCTGTTGGCATTTGGGGCGATGATATTGAGAAGGTCCTCGAGA 3752055
Query 111679 CATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCTTCAACGCT 111737
| || || ||||||| | ||| |||| ||||| | ||||| |||||||| |||
Sbjct 3752054 CCTATAACCTCATGTCCCAGAAGTAC-TTCACACACGCCTCGCCAACTCTCTTCAATGCT 3751996
Query 111738 GGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGATTCAATC 111797
||||| || ||| || ||| | ||||||||| || | | || ||||| ||
Sbjct 3751995 GGTACCCCGCAACCGCAGATGGCGTCTTGTTTCCTCATCGACATGAAAGAGGACAGCATT 3751936
Query 111798 AATGGCATTTACGGCACTCTCACTGAA----TGTGCCCAAATCTCAAAGTGGGCTGGTGG 111853
| || ||||||| || || |||| |||||| || || ||| ||| || ||
Sbjct 3751935 GAGGGTATTTACGATAC-CT---TGAAGACCTGTGCCTTGATTTCGAAGACGGCGGGAGG 3751880
Query 111854 TATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAATGG 111913
|||||| || || | ||| | ||||||||| | ||| ||| || ||||||||
Sbjct 3751879 CATCGGGCTGAACGTACATCGTATCAGAGCCACCGGCTCTTACATTGCCGGCACAAATGG 3751820
Query 111914 TCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAA 111973
|| | || || | || ||||| ||||| || || ||| || | ||||| |
Sbjct 3751819 ATCTTCCAACGGGATCGTGCCTATGCTCCGCGTCTTCAATAACACCGCAAGATATGTCGA 3751760
Query 111974 CCAAGCTGGGCGTCGCAAG------GGATCTATCGCAGTCTATCTTGAGCCATGGCACGC 112027
||||| || | |||| || | |||| ||||| |||||||| ||||||||
Sbjct 3751759 CCAAGGAGG---TAACAAGCGGCCAGGTGCGTTCGCCGTCTACCTTGAGCCCTGGCACGC 3751703
Query 112028 GGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCG 112087
||| || | |||||| | || ||||| || || || | ||||| | || |||
Sbjct 3751702 CGATGTCTTCGAGTTCTTGGACTTGCGCAAGAATCACGGCAAGGAGGAAGTCCGCGCCCG 3751643
Query 112088 CGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGG 112147
|| ||||||| ||||| |||| |||||||||||||||||| | || ||| ||| ||
Sbjct 3751642 TGACCTCTTCTTAGCTCTTTGGACCCCAGATCTCTTCATGAAGCGTGTCGAGAAGAATGC 3751583
Query 112148 CAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGA 112207
| | ||| | || ||||| || | | || || || || | || | ||||| ||
Sbjct 3751582 CGAATGGACGCTGTTTTGCCCCAATGAAGCTCCGGGCCTGGCTGACGTATACGGTGACGA 3751523
Query 112208 GTTTGAAGCCCTCTA 112222
|||||| ||||||||
Sbjct 3751522 GTTTGAGGCCCTCTA 3751508
>seq1
Length=10671843
Score = 129 bits (142), Expect = 7e-25
Identities = 157/213 (74%), Gaps = 6/213 (3%)
Strand=Plus/Plus
Query 102110 AGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAGTC 102166
|||||| ||||| | |||||||| || |||||||| || ||| | |||| || ||
Sbjct 3823037 AGTTCCTTGTATCCGCAAGAAAGCCGACTGGGCTATCAAATGGATCCAAGATAAGAACTC 3823096
Query 102167 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 102226
| |||||||| | || || | || || || |||||||||||||||||| ||
Sbjct 3823097 ---TACCTTTGCTCAACGCCTTGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTTAGCGG 3823153
Query 102227 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 102286
||| ||| | || | ||||| |||||||| ||||| ||||| ||||| ||||||
Sbjct 3823154 TTCTTTCGCTTCCATCTTCTGGCTTAAGAAGCGCGGTCTTATGCCGGGTCTGACCTTCTC 3823213
Query 102287 CAACGAGCTTATCTCTCGTGACGAGGGACTCCA 102319
||||| ||||||||||| |||||||| || ||
Sbjct 3823214 AAACGAACTTATCTCTCGCGACGAGGGTCTTCA 3823246
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620742345685040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |