Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1 86.0 7e-12 >seq1 Length=10671843 Score = 86.0 bits (94), Expect = 7e-12 Identities = 216/325 (66%), Gaps = 4/325 (1%) Strand=Plus/Minus Query 11674 TTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGT 11733 ||||| | || ||||| ||||| ||||| | ||| || ||| || | || | | Sbjct 5603686 TTACCTATTGCATCAATTTCATCAATGAAAATGATGCATGGTGTATTTTTCCTGGCGTTT 5603627 Query 11734 TCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCG 11793 ||||||| || || || || | || || || |||||||| || ||||| | | | Sbjct 5603626 GCGAAAAGGTCTCGCACTCGAGAGGGACCGACTCCGACGAACATTTCTACGAACTCAGAG 5603567 Query 11794 --GCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAG 11851 || || ||||||| ||| || || ||||| || || |||| || || || | Sbjct 5603566 CCGCTGA-CACTGAA-GAAAGGTACTCCTGACTCCCCGGCTGTGGCCTTCGCCAGTAGCG 5603509 Query 11852 TCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTC 11911 |||||||||||||||| | ||||| |||| ||| || || || ||||| || || || Sbjct 5603508 TCTTACCCGTACCAGGCGGACCAGATAGAATGGCACCGCGAGGTATCTTTGCGCCTAGTC 5603449 Query 11912 CAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGG 11971 || | | || | || | ||| ||||| |||| || |||| ||| || Sbjct 5603448 TCTGATATTGACCTGGTTCTTTCAAAAAGCTCACAAACTCCATAATTTCCATCTTCGCTT 5603389 Query 11972 AGTCGATACCCTCAACATCGGTGAA 11996 ||| |||||| ||||||| |||| Sbjct 5603388 CGTCCATACCCGCAACATCCTTGAA 5603364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975948464600