Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq1 86.0 7e-12
>seq1
Length=10671843
Score = 86.0 bits (94), Expect = 7e-12
Identities = 216/325 (66%), Gaps = 4/325 (1%)
Strand=Plus/Minus
Query 11674 TTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGT 11733
||||| | || ||||| ||||| ||||| | ||| || ||| || | || | |
Sbjct 5603686 TTACCTATTGCATCAATTTCATCAATGAAAATGATGCATGGTGTATTTTTCCTGGCGTTT 5603627
Query 11734 TCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCG 11793
||||||| || || || || | || || || |||||||| || ||||| | | |
Sbjct 5603626 GCGAAAAGGTCTCGCACTCGAGAGGGACCGACTCCGACGAACATTTCTACGAACTCAGAG 5603567
Query 11794 --GCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAG 11851
|| || ||||||| ||| || || ||||| || || |||| || || || |
Sbjct 5603566 CCGCTGA-CACTGAA-GAAAGGTACTCCTGACTCCCCGGCTGTGGCCTTCGCCAGTAGCG 5603509
Query 11852 TCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTC 11911
|||||||||||||||| | ||||| |||| ||| || || || ||||| || || ||
Sbjct 5603508 TCTTACCCGTACCAGGCGGACCAGATAGAATGGCACCGCGAGGTATCTTTGCGCCTAGTC 5603449
Query 11912 CAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGG 11971
|| | | || | || | ||| ||||| |||| || |||| ||| ||
Sbjct 5603448 TCTGATATTGACCTGGTTCTTTCAAAAAGCTCACAAACTCCATAATTTCCATCTTCGCTT 5603389
Query 11972 AGTCGATACCCTCAACATCGGTGAA 11996
||| |||||| ||||||| ||||
Sbjct 5603388 CGTCCATACCCGCAACATCCTTGAA 5603364
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588975948464600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |