Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq3 167 3e-36
seq1 91.5 2e-13
>seq3
Length=5817774
Score = 167 bits (184), Expect = 3e-36
Identities = 449/684 (66%), Gaps = 11/684 (2%)
Strand=Plus/Plus
Query 106700 TAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAG 106759
|||||||| |||||||| ||||| |||| | || || || || | | || ||
Sbjct 3751508 TAGAGGGCCTCAAACTCGTCACCGTATACGTCAGCCAGGCCCGGAGCTTCATTGGGGCAA 3751567
Query 106760 AAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGG 106819
|| || | ||||| || || ||| || ||||||||||| || ||||| |||| ||
Sbjct 3751568 AACAGCGTCCATTCGGCATTCTTCTCGACACGCTTCATGAAGAGATCTGGGGTCCAAAGA 3751627
Query 106820 GATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGG 106879
| | | ||||| || | || | || || | || || || || || || | |
Sbjct 3751628 GCTAAGAAGAGGTCACGGGCGCGGACTTCCTCCTTGCCGTGATTCTTGCGCAAGTCCAAG 3751687
Query 106880 AACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC 106939
||||| | || ||| |||||||| |||||||| ||||| |||| | || | | |||
Sbjct 3751688 AACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGACGGCGAACGCACC---TGGCCGC 3751744
Query 106940 ------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATA 106993
|| |||| | ||||| | || ||| || || ||||| ||||| || |
Sbjct 3751745 TTGTTACCTCCTTGGTCGACATATCTTGCGGTGTTATTGAAGACGCGGAGCATAGGCACG 3751804
Query 106994 ATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGG 107053
|| || | || |||||||| || ||| ||| ||||||| | | |||
Sbjct 3751805 ATCCCGTTGGAAGATCCATTTGTGCCGGCAATGTAAGAGCCGGTGGCTCTGATACGATGT 3751864
Query 107054 ATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCA 107113
| || || ||| || || || ||| ||| || || ||||| | | | || |
Sbjct 3751865 ACGTTCAGCCCGATGCCTCCCGCCGTCTTCGAAATCAAGGCACAGGTCTTCAAGGTATCG 3751924
Query 107114 TAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGT 107173
|| ||||| | || |||||| || || |||| ||||| ||| | ||||||||||
Sbjct 3751925 TAAATACCCTCAATGCTGTCCTCTTTCATGTCGATGAGGAAACAAGACGCCATCTGCGGT 3751984
Query 107174 CTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACAT 107232
|| ||||||||||||||||| ||||| | ||||| |||| ||| | ||||||||
Sbjct 3751985 TGCGGGGTACCAGCATTGAAGAGAGTTGGCGAGGCGTGTGTGAA-GTACTTCTGGGACAT 3752043
Query 107233 CTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACG 107292
|| || ||||| | ||| ||||| || || || ||||| | || |||||
Sbjct 3752044 GAGGTTATAGGTCTCGAGGACCTTCTCAATATCATCGCCCCAAATGCCAACAGCAACACG 3752103
Query 107293 CATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTT 107352
||| | ||||| ||| ||| | || || |||||| || || | ||||| |
Sbjct 3752104 CATTATCATGTGTTGAGGTCTCTCAGCGACCTTGCCATTAAGACGAAGTAGATAAGACCG 3752163
Query 107353 CTCAAGGGTTTTGAGACCAAAGTA 107376
||| ||||| |||| |||||||||
Sbjct 3752164 CTCGAGGGTCTTGAAACCAAAGTA 3752187
Score = 102 bits (112), Expect = 1e-16
Identities = 124/169 (73%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 106469 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAC 106528
|| |||||||||||||| || |||||| | || ||||| | |||||| || ||
Sbjct 3751222 GAAGCCAAATTGCAAACTGCTACCTCATCTGGTGCAGTATACTCGACAATTTCGGTGCAG 3751281
Query 106529 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCC 106588
| || || || ||| || || | |||||||||||| ||||| ||| ||||| ||
Sbjct 3751282 AGATTCGAGCTGCGAATTGTGCCGAGATTCTTTTGGTTGCTCTTGCGGTTACACGCGTCT 3751341
Query 106589 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTG 106637
||||| |||||| |||| | || ||||||||||| | | ||||||||
Sbjct 3751342 TTGTACAGCATGAAGGGGTTGCCGGTCTCCGTCTGGGCTTCGAGAATTG 3751390
>seq1
Length=10671843
Score = 91.5 bits (100), Expect = 2e-13
Identities = 109/148 (74%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 117286 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCC 117345
|| |||||||| || || || |||||||| ||||||||| || || ||||| |||||
Sbjct 3823246 TGAAGACCCTCGTCGCGAGAGATAAGTTCGTTTGAGAAGGTCAGACCCGGCATAAGACCG 3823187
Query 117346 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 117405
|||||||| | ||| | || | ||| || ||| |||||||||||||| |||
Sbjct 3823186 CGCTTCTTAAGCCAGAAGATGGAAGCGAAAGAACCGCTAAAGAAGATACCCTCAACAGCA 3823127
Query 117406 GCAAACGCAAAAAGGCGCTCGGCGAAGG 117433
|| || |||| |||||| | || ||||
Sbjct 3823126 GCGAAGGCAACAAGGCGTTGAGCAAAGG 3823099
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589980748376680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |