Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq3 167 3e-36 seq1 91.5 2e-13 >seq3 Length=5817774 Score = 167 bits (184), Expect = 3e-36 Identities = 449/684 (66%), Gaps = 11/684 (2%) Strand=Plus/Plus Query 106700 TAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAG 106759 |||||||| |||||||| ||||| |||| | || || || || | | || || Sbjct 3751508 TAGAGGGCCTCAAACTCGTCACCGTATACGTCAGCCAGGCCCGGAGCTTCATTGGGGCAA 3751567 Query 106760 AAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGG 106819 || || | ||||| || || ||| || ||||||||||| || ||||| |||| || Sbjct 3751568 AACAGCGTCCATTCGGCATTCTTCTCGACACGCTTCATGAAGAGATCTGGGGTCCAAAGA 3751627 Query 106820 GATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGG 106879 | | | ||||| || | || | || || | || || || || || || | | Sbjct 3751628 GCTAAGAAGAGGTCACGGGCGCGGACTTCCTCCTTGCCGTGATTCTTGCGCAAGTCCAAG 3751687 Query 106880 AACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC 106939 ||||| | || ||| |||||||| |||||||| ||||| |||| | || | | ||| Sbjct 3751688 AACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGACGGCGAACGCACC---TGGCCGC 3751744 Query 106940 ------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATA 106993 || |||| | ||||| | || ||| || || ||||| ||||| || | Sbjct 3751745 TTGTTACCTCCTTGGTCGACATATCTTGCGGTGTTATTGAAGACGCGGAGCATAGGCACG 3751804 Query 106994 ATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGG 107053 || || | || |||||||| || ||| ||| ||||||| | | ||| Sbjct 3751805 ATCCCGTTGGAAGATCCATTTGTGCCGGCAATGTAAGAGCCGGTGGCTCTGATACGATGT 3751864 Query 107054 ATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCA 107113 | || || ||| || || || ||| ||| || || ||||| | | | || | Sbjct 3751865 ACGTTCAGCCCGATGCCTCCCGCCGTCTTCGAAATCAAGGCACAGGTCTTCAAGGTATCG 3751924 Query 107114 TAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGT 107173 || ||||| | || |||||| || || |||| ||||| ||| | |||||||||| Sbjct 3751925 TAAATACCCTCAATGCTGTCCTCTTTCATGTCGATGAGGAAACAAGACGCCATCTGCGGT 3751984 Query 107174 CTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACAT 107232 || ||||||||||||||||| ||||| | ||||| |||| ||| | |||||||| Sbjct 3751985 TGCGGGGTACCAGCATTGAAGAGAGTTGGCGAGGCGTGTGTGAA-GTACTTCTGGGACAT 3752043 Query 107233 CTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACG 107292 || || ||||| | ||| ||||| || || || ||||| | || ||||| Sbjct 3752044 GAGGTTATAGGTCTCGAGGACCTTCTCAATATCATCGCCCCAAATGCCAACAGCAACACG 3752103 Query 107293 CATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTT 107352 ||| | ||||| ||| ||| | || || |||||| || || | ||||| | Sbjct 3752104 CATTATCATGTGTTGAGGTCTCTCAGCGACCTTGCCATTAAGACGAAGTAGATAAGACCG 3752163 Query 107353 CTCAAGGGTTTTGAGACCAAAGTA 107376 ||| ||||| |||| ||||||||| Sbjct 3752164 CTCGAGGGTCTTGAAACCAAAGTA 3752187 Score = 102 bits (112), Expect = 1e-16 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 106469 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAC 106528 || |||||||||||||| || |||||| | || ||||| | |||||| || || Sbjct 3751222 GAAGCCAAATTGCAAACTGCTACCTCATCTGGTGCAGTATACTCGACAATTTCGGTGCAG 3751281 Query 106529 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCC 106588 | || || || ||| || || | |||||||||||| ||||| ||| ||||| || Sbjct 3751282 AGATTCGAGCTGCGAATTGTGCCGAGATTCTTTTGGTTGCTCTTGCGGTTACACGCGTCT 3751341 Query 106589 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTG 106637 ||||| |||||| |||| | || ||||||||||| | | |||||||| Sbjct 3751342 TTGTACAGCATGAAGGGGTTGCCGGTCTCCGTCTGGGCTTCGAGAATTG 3751390 >seq1 Length=10671843 Score = 91.5 bits (100), Expect = 2e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 117286 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCC 117345 || |||||||| || || || |||||||| ||||||||| || || ||||| ||||| Sbjct 3823246 TGAAGACCCTCGTCGCGAGAGATAAGTTCGTTTGAGAAGGTCAGACCCGGCATAAGACCG 3823187 Query 117346 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 117405 |||||||| | ||| | || | ||| || ||| |||||||||||||| ||| Sbjct 3823186 CGCTTCTTAAGCCAGAAGATGGAAGCGAAAGAACCGCTAAAGAAGATACCCTCAACAGCA 3823127 Query 117406 GCAAACGCAAAAAGGCGCTCGGCGAAGG 117433 || || |||| |||||| | || |||| Sbjct 3823126 GCGAAGGCAACAAGGCGTTGAGCAAAGG 3823099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980748376680