Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq1 123 3e-23 >seq1 Length=10671843 Score = 123 bits (136), Expect = 3e-23 Identities = 192/271 (71%), Gaps = 4/271 (1%) Strand=Plus/Plus Query 158422 GACATTGCTGTAGGTAGTATGCAAAG-GTTT-GGTATTCCTATGGGATACGGAGGTCCTC 158479 || |||||| | || | ||||| || |||| || | ||| | || || || ||||| | Sbjct 7409673 GATATTGCTTTTGGCA--ATGCACAGCGTTTCGGCGTGCCTTTCGGCTATGGTGGTCCGC 7409730 Query 158480 ATGCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG 158539 |||| || ||||| || | || ||||||||||| ||||| || ||| | |||| | Sbjct 7409731 ATGCAGCTTTCTTCGCCTGCAGCGAAAAGTATAAGAGGAAGATCCCAGGCCGGCTTGTCG 7409790 Query 158540 GTCAGTCAGTAGATAGCGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGC 158599 | ||| ||| || ||| |||| ||| | || || || ||||| |||||| Sbjct 7409791 GAGTGTCTAAAGACAGGCTGGGTGATAAGGCAATGCGGTTGGCGCTCCAGACCCGAGAGC 7409850 Query 158600 AGCATATCAGAAGAGACAAAGCAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTA 158659 | ||||||||| |||| || ||||| ||||| ||||| || || ||||| ||||| || | Sbjct 7409851 AACATATCAGACGAGAAAAGGCAACGAGTAATATCTGTACTGCCCAAGCTCTGCTAGCGA 7409910 Query 158660 ATATGTCTGGGTTCTATGCAGCATATCATGG 158690 | ||| || || ||||| | |||||||| Sbjct 7409911 ACATGAGTGCCTTTTATGCTGTTTATCATGG 7409941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588051148545520