Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq2 152 1e-31
seq6 107 4e-18
>seq2
Length=7009248
Score = 152 bits (168), Expect = 1e-31
Identities = 159/209 (76%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|||||||| || || |||||||| ||||| |||||||||| ||| || |||||||| ||
Sbjct 3059384 ACAAGGTGGAGGGTTGACTCTTTCTGAATGTTGTAATCGGAAAGTGTCCTCCCATCCTCC 3059325
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || || || || || ||||| || || || ||||||||||| || ||
Sbjct 3059324 AGCTGCTTGCCGGCAAATATGAGACGCTGTTGATCCGGTGGGATGCCTTCTTTATCCTGT 3059265
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||| || || || |||||||| || || ||||| ||||||| |||||
Sbjct 3059264 ATCTTCGACTTCACATTGTCGATGGTGTCTGACGACTCAACTTCGAGGGTAATAGTCTTG 3059205
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| |||| || || ||||| | |||||
Sbjct 3059204 CCAGTCAGTGTCTTGACGAAGATCTGCAT 3059176
Score = 149 bits (164), Expect = 1e-30
Identities = 141/180 (78%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||||||||||||||| || ||||| ||||| || | ||||| | || |||||||||||
Sbjct 3058868 GTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGATAGAGTACGGCCGTCTTCGAGCTG 3058809
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||| || |||||||| | || || || || || ||||||||||| ||||| ||||| ||
Sbjct 3058808 CTTGCCAGCGAAGATCAAGCGCTGCTGATCCGGGGGAATGCCTTCCTTGTCCTGAATCTT 3058749
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
|||||| || || |||||||||||| ||||| |||||||| | ||||| || ||
Sbjct 3058748 GGACTTGACATTATCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGTCTTGCCGGT 3058689
Score = 136 bits (150), Expect = 9e-27
Identities = 141/185 (76%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| |||||||||||||| || |||||||| ||||| || | ||||| | ||||| ||
Sbjct 3059156 ACGAGGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCAGACAGAGTACGTCCATCCTCA 3059097
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || ||||| | || || || |||||||||||||| || ||||| ||
Sbjct 3059096 AGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGG 3059037
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || |||||| || || ||||| ||||| |||||| || | ||| | ||||||
Sbjct 3059036 ATCTTAGCCTTGACATTGTCGATGGTATCCGAGGATTCCACCTCCAAGGTGATGGTCTTT 3058977
Query 195112 CCTGT 195116
|| ||
Sbjct 3058976 CCAGT 3058972
Score = 129 bits (142), Expect = 1e-24
Identities = 155/211 (73%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||| | ||| | ||| ||||||||| || |||||||| || || | || |||||
Sbjct 3059613 AACCAAGTGCAATGTGCTCTCTTTTTGGATGTTGTAATCACTCAGTGTCCGGCCGTCTTC 3059554
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
| |||||| || |||||||| | ||| ||||||||||| || || || |||||||||||
Sbjct 3059553 CAACTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGATACCCTCTTTGTCTTG 3059494
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
|| || ||||||||| || || ||||| || ||| ||||| || || | |||||
Sbjct 3059493 GATCTTCGACTTGACGTTGTCGATTGTGTCTGATGATTCGACTTCCAGCGTTATTGTCTT 3059434
Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATT 195141
|| || | || |||||||| | ||||||
Sbjct 3059433 CCCAGTAAGCGTCTTTACGAAGATCTGCATT 3059403
>seq6
Length=2243500
Score = 107 bits (118), Expect = 4e-18
Identities = 94/117 (80%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| |||||||||||||| || || ||||| |||| || || | |||||||||
Sbjct 1182125 ACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCG 1182184
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048
|| ||||| || |||||||| || || |||||||| || || || ||||| ||||||
Sbjct 1182185 AGTTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCGGGTGGGATACCTTCCTTGTCT 1182241
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109481500493369
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |