Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq2 100 2e-16
>seq2
Length=7009248
Score = 100 bits (110), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
||||| || | ||||| || ||||| ||||| || ||||| | |||| |||| |||
Sbjct 3059840 ACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAATCCGACAACGTTCGGCCATCCTCC 3059781
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| || || ||||| || | || |||||||| |||| | ||||| |||||
Sbjct 3059780 AGCTGCTTCCCAGCAAAAATCAAACGCTGCTGGTCCGGCGGGATACCCTCTTTGTCCTGG 3059721
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
||||| || ||| | |||| || |||||| || | ||| || || |||
Sbjct 3059720 ATCTTGCTCTTAACGTTGTCAATCGTGTCGGAACTCTCAACTTCCAAGGTGATCGTCTTT 3059661
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|| || || ||||| |||||||||||||||
Sbjct 3059660 CCGGTAAGCGTCTTGACAAAGATCTGCATA 3059631
Score = 89.7 bits (98), Expect = 3e-13
Identities = 140/198 (71%), Gaps = 8/198 (4%)
Strand=Plus/Minus
Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837
||||| ||| ||| || |||||||| ||||| || || | ||| |||| || |||||
Sbjct 3059151 GTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCAGACAGAGTACGTCCATCCTCAAGCTG 3059092
Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897
|| |||||||| || | || ||||| ||| | || | ||||||||||| |||||
Sbjct 3059091 CTTGCCGGCAAAGATCAAGCGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGGATCTT 3059032
Query 34898 CTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTC 34953
||||| || | ||||| || || || || || | ||| ||||| ||||
Sbjct 3059031 AGCCTTGAC--AT--TGTCGATGGTATCCGAGGATTCCACCTCCAAGGTGATGGTCTTTC 3058976
Query 34954 CCGTGAGAGTCTTCACAA 34971
| ||||| ||||||||||
Sbjct 3058975 CAGTGAGCGTCTTCACAA 3058958
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324633572304696
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |