Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1 89.7 4e-12 >seq1 Length=10671843 Score = 89.7 bits (98), Expect = 4e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 ||||| || || || || || ||||| || || ||||| || || |||||||| | || Sbjct 5945264 ACTGTCCCCGCCTACTTCAACGACTCCCAGCGCCAAGCAACAAAGGATGCTGGTCTGATC 5945205 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 ||||| || || || || ||||||||||| || || || || ||||| |||| || || Sbjct 5945204 GCTGGTCTAAACGTCCTACGTATTATCAACGAGCCCACCGCCGCTGCTATTGCCTACGGT 5945145 Query 550529 CTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGA 550572 ||||| || | | ||| || | ||||| ||||| || || Sbjct 5945144 CTTGACAAGAAAACTGAGGGCGAGCGCAATGTTCTCATATTCGA 5945101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029295629808430