Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq2 125 6e-24
>seq2
Length=7009248
Score = 125 bits (138), Expect = 6e-24
Identities = 165/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300
|||| || | || ||| | || | || ||||| || ||||| || || ||||||||||
Sbjct 3059404 TTCCACCACGTAGACGAAGGACAAGGTGGAGGGTTGACTCTTTCTGAATGTTGTAATCGG 3059345
Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360
| || || |||| |||| ||||| || |||||||| | |||||||||||| || |
Sbjct 3059344 AAAGTGTCCTCCCATCCTCCAGCTGCTTGCCGGCAAATATGAGACGCTGTTGATCCGGTG 3059285
Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420
| |||||||||||||| || || || || ||| | || | ||||| |||| || |
Sbjct 3059284 GGATGCCTTCTTTATCCTGTATCTTCGACTTCACATTGTCGATGGTGTCTGACGACTCAA 3059225
Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|||| || || | || ||||| || | || || || || ||||||||
Sbjct 3059224 CTTCGAGGGTAATAGTCTTGCCAGTCAGTGTCTTGACGAAGATCTGCAT 3059176
Score = 102 bits (112), Expect = 6e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|| ||||| ||||| || || || || |||||||| | | |||| | |||| |||
Sbjct 3059840 ACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAATCCGACAACGTTCGGCCATCCTCC 3059781
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
| ||||| || ||||| ||||||||||| || || ||||| || || ||||| || ||
Sbjct 3059780 AGCTGCTTCCCAGCAAAAATCAAACGCTGCTGGTCCGGCGGGATACCCTCTTTGTCCTGG 3059721
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|| || || || | || | ||||| || | || ||||| | |||| ||| ||
Sbjct 3059720 ATCTTGCTCTTAACGTTGTCAATCGTGTCGGAACTCTCAACTTCCAAGGTGATCGTCTTT 3059661
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469
||||| | || || ||||| ||||||||
Sbjct 3059660 CCGGTAAGCGTCTTGACAAAGATCTGCAT 3059632
Score = 100 bits (110), Expect = 2e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
||||| | | ||||| || || ||||| || || || || || || ||||| || |
Sbjct 3058891 CCTCCGCGGAGACGTAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGAT 3058832
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| ||| | | | || || | ||||| || || || ||||| ||||| ||||| || |||
Sbjct 3058831 AGAGTACGGCCGTCTTCGAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGATCCGGGGGA 3058772
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
|||||||| || || ||||| || || ||| | || | ||||| || | |||||
Sbjct 3058771 ATGCCTTCCTTGTCCTGAATCTTGGACTTGACATTATCGATGGTGTCCGAAGACTCCACC 3058712
Query 101423 TCAAGAGTGACCGTTTTGCCGGT 101445
||||| |||| || ||||||||
Sbjct 3058711 TCAAGGGTGATGGTCTTGCCGGT 3058689
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396278366192499
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |