Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq3 91.5 3e-13 >seq3 Length=5817774 Score = 91.5 bits (100), Expect = 3e-13 Identities = 168/242 (69%), Gaps = 6/242 (2%) Strand=Plus/Plus Query 213171 GAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATG 213230 |||||||| ||| |||||| |||| | |||||| || || ||| ||| ||| ||| Sbjct 3750901 GAGTAGGGTCCAGACTCCTTTGCCATTTGGCAGGAGGCTGTCATGGCTCCGTGGTATATG 3750960 Query 213231 GTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATG 213290 || || || |||| |||| || | ||| ||||| || || ||| || | | | Sbjct 3750961 GTCTCGAAGATCTGAATGTTAAGTTGCTTAGCCTCCGGCGAGTCGAACGGAAGGCGAA-G 3751019 Query 213291 CGTT-GGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTT 213349 || | |||| ||||||| ||||||||||| |||| |||||||||| ||||| | ||| Sbjct 3751020 CGCTAGGAAGGCATCAGCAAGCCCCTGGACACCGAGAGCGATGGGTCTATGTCTGAAGTT 3751079 Query 213350 AGACTTGG--AGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTG 213407 ||| | | ||| || | ||||| |||| ||||| |||||||| || || Sbjct 3751080 --GCTTCGCTTGGCCTCTTCGACTGGGTAGTGGTTGATATCGATAATCTTGTTTAGATTT 3751137 Query 213408 CG 213409 || Sbjct 3751138 CG 3751139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532718490880