Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq3 91.5 3e-13
>seq3
Length=5817774
Score = 91.5 bits (100), Expect = 3e-13
Identities = 168/242 (69%), Gaps = 6/242 (2%)
Strand=Plus/Plus
Query 213171 GAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATG 213230
|||||||| ||| |||||| |||| | |||||| || || ||| ||| ||| |||
Sbjct 3750901 GAGTAGGGTCCAGACTCCTTTGCCATTTGGCAGGAGGCTGTCATGGCTCCGTGGTATATG 3750960
Query 213231 GTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATG 213290
|| || || |||| |||| || | ||| ||||| || || ||| || | | |
Sbjct 3750961 GTCTCGAAGATCTGAATGTTAAGTTGCTTAGCCTCCGGCGAGTCGAACGGAAGGCGAA-G 3751019
Query 213291 CGTT-GGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTT 213349
|| | |||| ||||||| ||||||||||| |||| |||||||||| ||||| | |||
Sbjct 3751020 CGCTAGGAAGGCATCAGCAAGCCCCTGGACACCGAGAGCGATGGGTCTATGTCTGAAGTT 3751079
Query 213350 AGACTTGG--AGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTG 213407
||| | | ||| || | ||||| |||| ||||| |||||||| || ||
Sbjct 3751080 --GCTTCGCTTGGCCTCTTCGACTGGGTAGTGGTTGATATCGATAATCTTGTTTAGATTT 3751137
Query 213408 CG 213409
||
Sbjct 3751138 CG 3751139
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931532718490880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |