Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1 113 8e-20 >seq1 Length=10671843 Score = 113 bits (124), Expect = 8e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 25834 TGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTT 25893 ||||| || || |||||| | ||| | |||| |||| | || || || ||||| Sbjct 3823065 TGGGCTATCAAATGGATCCAAGATAAGAACTCTACCTTTGCTCAACGCCTTGTTGCCTTC 3823124 Query 25894 GCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAG 25953 |||||||| ||||| ||||| || |||||||| || || ||||||||||||| ||| || Sbjct 3823125 GCTGCTGTTGAGGGTATCTTCTTTAGCGGTTCTTTCGCTTCCATCTTCTGGCTTAAGAAG 3823184 Query 25954 AAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTC 26013 || ||||| || ||| ||| || ||||| || ||| | ||||||||||| Sbjct 3823185 CGCGGTCTTATGCCGGGTCTGACCTTCTCAAACGAACTTATCTCTCGCGACGAGGGTCTT 3823244 Query 26014 CACAGAGATTTTGCCTGCCTGCTCT 26038 || | || || |||||||| |||| Sbjct 3823245 CATACTGACTTCGCCTGCCTCCTCT 3823269 Score = 84.2 bits (92), Expect = 4e-11 Identities = 161/234 (69%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| ||||||||||||||||| || ||| ||||||||| |||||||| || || Sbjct 3822655 ATCTGGCAGATGTACAAGAAGGCTGAAGCATCATTCTGGACCGCGGAAGAGATCGACCTC 3822714 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGT-- 25594 | || || || ||| ||| || | ||| ||||| | | | ||| | Sbjct 3822715 TCGAAAGATTTGCACGATTGGAACAACAGACTCAACGACGACGAACGCTACTTCATTTCC 3822774 Query 25595 -ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | || || ||||| || || |||||||| || |||||||| || ||| | Sbjct 3822775 CACGTCCTCGCCTTTTTTGCTGCATCAGATGGTATCGTCAACGAGAACCTAGTTGAGCGC 3822834 Query 25654 TTCACCAGGGAAGTGC-AGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 |||| | ||||| | | ||| | ||||| || ||||||||||||||||| Sbjct 3822835 TTCAGTGGCGAAGTTCAAATACCT-GAGGCACGATGCTTCTACGGTTTCCAGAT 3822887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844718726080