Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq1 113 8e-20
>seq1
Length=10671843
Score = 113 bits (124), Expect = 8e-20
Identities = 148/205 (72%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 25834 TGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTT 25893
||||| || || |||||| | ||| | |||| |||| | || || || |||||
Sbjct 3823065 TGGGCTATCAAATGGATCCAAGATAAGAACTCTACCTTTGCTCAACGCCTTGTTGCCTTC 3823124
Query 25894 GCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAG 25953
|||||||| ||||| ||||| || |||||||| || || ||||||||||||| ||| ||
Sbjct 3823125 GCTGCTGTTGAGGGTATCTTCTTTAGCGGTTCTTTCGCTTCCATCTTCTGGCTTAAGAAG 3823184
Query 25954 AAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTC 26013
|| ||||| || ||| ||| || ||||| || ||| | |||||||||||
Sbjct 3823185 CGCGGTCTTATGCCGGGTCTGACCTTCTCAAACGAACTTATCTCTCGCGACGAGGGTCTT 3823244
Query 26014 CACAGAGATTTTGCCTGCCTGCTCT 26038
|| | || || |||||||| ||||
Sbjct 3823245 CATACTGACTTCGCCTGCCTCCTCT 3823269
Score = 84.2 bits (92), Expect = 4e-11
Identities = 161/234 (69%), Gaps = 5/234 (2%)
Strand=Plus/Plus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| ||| ||||||||||||||||| || ||| ||||||||| |||||||| || ||
Sbjct 3822655 ATCTGGCAGATGTACAAGAAGGCTGAAGCATCATTCTGGACCGCGGAAGAGATCGACCTC 3822714
Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGT-- 25594
| || || || ||| ||| || | ||| ||||| | | | ||| |
Sbjct 3822715 TCGAAAGATTTGCACGATTGGAACAACAGACTCAACGACGACGAACGCTACTTCATTTCC 3822774
Query 25595 -ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653
|||| | || || ||||| || || |||||||| || |||||||| || ||| |
Sbjct 3822775 CACGTCCTCGCCTTTTTTGCTGCATCAGATGGTATCGTCAACGAGAACCTAGTTGAGCGC 3822834
Query 25654 TTCACCAGGGAAGTGC-AGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706
|||| | ||||| | | ||| | ||||| || |||||||||||||||||
Sbjct 3822835 TTCAGTGGCGAAGTTCAAATACCT-GAGGCACGATGCTTCTACGGTTTCCAGAT 3822887
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928844718726080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |