Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq1 105 8e-18 >seq1 Length=10671843 Score = 105 bits (116), Expect = 8e-18 Identities = 188/271 (69%), Gaps = 4/271 (1%) Strand=Plus/Minus Query 139272 CCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATG 139331 |||||||| | ||||| || || ||| || || ||||| ||||| || || ||||| Sbjct 7409941 CCATGATAAACAGCATAAAAGGCACTCATGTTCGCTAGCAGAGCTTGGGCAGTACAGATA 7409882 Query 139332 TTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTAT 139391 ||||| ||||| || |||| ||| ||||| ||||||| || || || || || | | Sbjct 7409881 TTACTCGTTGCCTTTTCTCGTCTGATATGTTGCTCTCGGGTCTGGAGCGCCAACCGCATT 7409822 Query 139392 GCAGGATTGCCTTCGCTGTCCACTGACTGACCTACAATTCTGCCAGGTATCTTTCTCTTA 139451 || || || ||||| ||| || |||| | ||| || ||||| |||||| Sbjct 7409821 GCCTTATCACCCAGCCTGTCTTTAGACACTCCGACAAGCCGGCCTGGGATCTTCCTCTTA 7409762 Query 139452 TACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGTATCCCATAGGAATACC- 139510 ||||| || | || ||||| || ||||| ||||| || || || | ||| | || Sbjct 7409761 TACTTTTCGCTGCAGGCGAAGAAAGCTGCATGCGGACCACCATAGCCGAAAGGCACGCCG 7409702 Query 139511 AAAC-CTTTGCATACTACCTACAGCAATATC 139540 |||| || ||||| | || | ||||||||| Sbjct 7409701 AAACGCTGTGCAT--TGCCAAAAGCAATATC 7409673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578998349337640