Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_020845.1
Length=180977
Score E
Sequences producing significant alignments: (Bits) Value
seq1 105 8e-18
>seq1
Length=10671843
Score = 105 bits (116), Expect = 8e-18
Identities = 188/271 (69%), Gaps = 4/271 (1%)
Strand=Plus/Minus
Query 139272 CCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATG 139331
|||||||| | ||||| || || ||| || || ||||| ||||| || || |||||
Sbjct 7409941 CCATGATAAACAGCATAAAAGGCACTCATGTTCGCTAGCAGAGCTTGGGCAGTACAGATA 7409882
Query 139332 TTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTAT 139391
||||| ||||| || |||| ||| ||||| ||||||| || || || || || | |
Sbjct 7409881 TTACTCGTTGCCTTTTCTCGTCTGATATGTTGCTCTCGGGTCTGGAGCGCCAACCGCATT 7409822
Query 139392 GCAGGATTGCCTTCGCTGTCCACTGACTGACCTACAATTCTGCCAGGTATCTTTCTCTTA 139451
|| || || ||||| ||| || |||| | ||| || ||||| ||||||
Sbjct 7409821 GCCTTATCACCCAGCCTGTCTTTAGACACTCCGACAAGCCGGCCTGGGATCTTCCTCTTA 7409762
Query 139452 TACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGTATCCCATAGGAATACC- 139510
||||| || | || ||||| || ||||| ||||| || || || | ||| | ||
Sbjct 7409761 TACTTTTCGCTGCAGGCGAAGAAAGCTGCATGCGGACCACCATAGCCGAAAGGCACGCCG 7409702
Query 139511 AAAC-CTTTGCATACTACCTACAGCAATATC 139540
|||| || ||||| | || | |||||||||
Sbjct 7409701 AAACGCTGTGCAT--TGCCAAAAGCAATATC 7409673
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578998349337640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |