Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq3 149 7e-31
seq1 93.3 5e-14
>seq3
Length=5817774
Score = 149 bits (164), Expect = 7e-31
Identities = 446/684 (65%), Gaps = 11/684 (2%)
Strand=Plus/Minus
Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGCTCGATGGCATCCTCATG 75205
||||||||| |||| ||||| ||| | ||||| | || || |||||| ||
Sbjct 3752187 TACTTTGGTTTCAAGACCCTCGAGCGGTCTTATCTACTTCGTCTTAATGGCAAGGTCGCT 3752128
Query 75206 GAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGAT 75265
|| | || || ||||| | ||||| || || | ||||| || || || |||||
Sbjct 3752127 GAGAGACCTCAACACATGATAATGCGTGTTGCTGTTGGCATTTGGGGCGATGATATTGAG 3752068
Query 75266 TCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAAC 75324
||| | ||||| || || |||||||| | ||| |||| ||||| | |||||
Sbjct 3752067 AAGGTCCTCGAGACCTATAACCTCATGTCCCAGAAGTAC-TTCACACACGCCTCGCCAAC 3752009
Query 75325 CCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAA 75384
||||||||||||||||| || |||||||||| | ||| ||||| |||| || ||
Sbjct 3752008 TCTCTTCAATGCTGGTACCCCGCAACCGCAGATGGCGTCTTGTTTCCTCATCGACATGAA 3751949
Query 75385 GGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTG 75444
|||||| || | ||||| || | || | | | ||||| || || |||
Sbjct 3751948 AGAGGACAGCATTGAGGGTATTTACGATACCTTGAAGACCTGTGCCTTGATTTCGAAGAC 3751889
Query 75445 GGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGG 75504
||| || || || ||| || || | ||| | | ||||||| ||| ||| ||
Sbjct 3751888 GGCGGGAGGCATCGGGCTGAACGTACATCGTATCAGAGCCACCGGCTCTTACATTGCCGG 3751829
Query 75505 GACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCG 75564
|||||||| || | || || | || ||||| ||||| || || ||| || |
Sbjct 3751828 CACAAATGGATCTTCCAACGGGATCGTGCCTATGCTCCGCGTCTTCAATAACACCGCAAG 3751769
Query 75565 CTATGTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAACC 75618
||||| | |||| || ||| || ||| | | |||| |||||| | || ||
Sbjct 3751768 ATATGTCGACCAAGGAGGTAACAAGCG--GCCAGGTG-CGTTCGCCGTCTACCTTGAGCC 3751712
Query 75619 ATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGC 75678
||||| |||||| || | |||||| | || || || || || || | || || |
Sbjct 3751711 CTGGCACGCCGATGTCTTCGAGTTCTTGGACTTGCGCAAGAATCACGGCAAGGAGGAAGT 3751652
Query 75679 TCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGA 75738
|| | || ||||| | | | || |||| ||||| || ||||||||||| || ||
Sbjct 3751651 CCGCGCCCGTGACCTCTTCTTAGCTCTTTGGACCCCAGATCTCTTCATGAAGCGTGTCGA 3751592
Query 75739 GGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGT 75798
| || || ||||| | || || || || | | || || || || | ||||
Sbjct 3751591 GAAGAATGCCGAATGGACGCTGTTTTGCCCCAATGAAGCTCCGGGCCTGGCTGACGTATA 3751532
Query 75799 GGGTGAGGAGTTTGAAGCCCTCTA 75822
||||| |||||||| ||||||||
Sbjct 3751531 CGGTGACGAGTTTGAGGCCCTCTA 3751508
Score = 113 bits (124), Expect = 5e-20
Identities = 125/167 (75%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 75887 ATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAAC 75946
|||||| || | ||||||||||| || | || | ||||| ||||| || || ||||||
Sbjct 3751388 ATTCTCGAAGCCCAGACGGAGACCGGCAACCCCTTCATGCTGTACAAAGACGCGTGTAAC 3751329
Query 75947 AAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATT 76006
||||| |||||||||||| | || ||||| ||||| ||||| ||||| ||||||
Sbjct 3751328 CGCAAGAGCAACCAAAAGAATCTCGGCACAATTCGCAGCTCGAATCTCTGCACCGAAATT 3751269
Query 76007 TTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATC 76053
| ||||| || | |||||| || |||||||||||||| ||
Sbjct 3751268 GTCGAGTATACTGCACCAGATGAGGTAGCAGTTTGCAATTTGGCTTC 3751222
>seq1
Length=10671843
Score = 93.3 bits (102), Expect = 5e-14
Identities = 226/339 (67%), Gaps = 20/339 (6%)
Strand=Plus/Minus
Query 13559 CCCAAGTTGGATGACGCGAACAAGGCGGGTACGGCACAATCTGGAAA---GTGTACTCTC 13615
|||||| | ||| || ||||| || |||||| | | |||| | |||||| |
Sbjct 351626 CCCAAGCTTACTGATGCCAACAAAGCTGGTACGAAAGA---TGGATACCAGTGTACCTTG 351570
Query 13616 ATTGTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCTCTGTCGTTGGT 13675
|| | || || || |||||||||||| || || | || || | ||||||||||||
Sbjct 351569 ATCCTGACGGAAGGCGATTCGGCTAAAGGTCTGGCAATGGCAGGGCGCTCTGTCGTTGGG 351510
Query 13676 CGTGATCACTACGGTGTGTTCCCACTTCGCGGTAAATGTAAGAATGTTCGGGACGCTTCG 13735
| ||||| || ||||| ||||| ||||| ||||| | |||||||| ||||| |||
Sbjct 351509 CCTGATCTCTTTGGTGTTTTCCCCCTTCGTGGTAAGCTTCTCAATGTTCGAGACGCCTCG 351450
Query 13736 GTGGCACAGCTCACATCAAACCAGGAGTTCAACGATCTCAAGAAGATCCTTGGTCTTCA- 13794
|| | ||| || | ||| |||| | | | |||||||| || | || ||| |
Sbjct 351449 GTTGACCAGATCTCGAAGAACGCGGAGATACAAAACATCAAGAAGTTCATAGGGCTTAAG 351390
Query 13795 -ACAAGGAAAAGACTACCAAGATGTTTCTGAA-----CTTCGCTATGGTCGTCTTATGAT 13848
||||| | || ||||| || ||| | || |||||||| | | |||||
Sbjct 351389 CACAAG--ACGGATTACCAGGA-----CTGCAAGAGTCTCCGCTATGGACACATCATGAT 351337
Query 13849 TATGACAGATGCCGATAATGATGGTTCTCACATCAAGGG 13887
||||| ||| ||| |||| ||| || ||||| ||
Sbjct 351336 CATGACGGATCAGGATCATGACGGTAGCCATATCAAAGG 351298
Score = 91.5 bits (100), Expect = 2e-13
Identities = 109/148 (74%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 65069 CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCAT 65128
|||| || | |||||| |||| || || ||| |||||||||||||| ||| || |
Sbjct 3823099 CCTTTGCTCAACGCCTTGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTTAGCGGTTCTT 3823158
Query 65129 TCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATG 65188
|| | || | ||| | |||||||| ||||| ||||| || || ||||||||| |
Sbjct 3823159 TCGCTTCCATCTTCTGGCTTAAGAAGCGCGGTCTTATGCCGGGTCTGACCTTCTCAAACG 3823218
Query 65189 AACTTATTTCCCGAGATGAGGGTCTCCA 65216
||||||| || || || |||||||| ||
Sbjct 3823219 AACTTATCTCTCGCGACGAGGGTCTTCA 3823246
Score = 82.4 bits (90), Expect = 9e-11
Identities = 212/317 (67%), Gaps = 6/317 (2%)
Strand=Plus/Plus
Query 175186 TTCAGTGATGTTGAGGGGATTGACGCCGCCAAAGATG-AACTTGAAGAGATTGTGGATTT 175244
|||| ||||||| ||| || |||| || || |||| || || ||| ||||| ||
Sbjct 5603364 TTCAAGGATGTTGCGGGTATGGACGAAGCGAA-GATGGAAATTATGGAGTTTGTGAGCTT 5603422
Query 175245 TCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGCGCCCTTCT 175304
| | || |||| | |||| || || || ||||| || || || ||| ||||
Sbjct 5603423 TTTGAAAGAACCAGGTCAATATCAGAGACTAGGCGCAAAGATACCTCGCGGTGCCATTCT 5603482
Query 175305 CGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAA 175364
| ||| ||| |||||||| ||||| || || || |||| || || || |||
Sbjct 5603483 ATCTGGTCCGCCTGGTACGGGTAAGACGCTACTGGCGAAGGCCACAGCCGGGGAGTCAGG 5603542
Query 175365 TGTCCCATTCATCCAGTGCTCTGCCGCAA--ACTTTGTGGAGATGTTTGTTGGTGTGGGT 175422
|| || ||| || |||| || || || | || || || ||||| || || || |||
Sbjct 5603543 AGTACCTTTCTTC-AGTG-TCAGCGGCTCTGAGTTCGTAGAAATGTTCGTCGGAGTCGGT 5603600
Query 175423 GCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTC 175482
|| | || || || || || | || |||| | ||||| |||||| || | |||
Sbjct 5603601 CCCTCTCGAGTGCGAGACCTTTTCGCAAACGCCAGGAAAAATACACCATGCATCATTTTC 5603660
Query 175483 ATTGATGAGATTGATGC 175499
|||||||| ||||||||
Sbjct 5603661 ATTGATGAAATTGATGC 5603677
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596569547800160
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