Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq3 149 7e-31 seq1 93.3 5e-14 >seq3 Length=5817774 Score = 149 bits (164), Expect = 7e-31 Identities = 446/684 (65%), Gaps = 11/684 (2%) Strand=Plus/Minus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGCTCGATGGCATCCTCATG 75205 ||||||||| |||| ||||| ||| | ||||| | || || |||||| || Sbjct 3752187 TACTTTGGTTTCAAGACCCTCGAGCGGTCTTATCTACTTCGTCTTAATGGCAAGGTCGCT 3752128 Query 75206 GAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGAT 75265 || | || || ||||| | ||||| || || | ||||| || || || ||||| Sbjct 3752127 GAGAGACCTCAACACATGATAATGCGTGTTGCTGTTGGCATTTGGGGCGATGATATTGAG 3752068 Query 75266 TCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAAC 75324 ||| | ||||| || || |||||||| | ||| |||| ||||| | ||||| Sbjct 3752067 AAGGTCCTCGAGACCTATAACCTCATGTCCCAGAAGTAC-TTCACACACGCCTCGCCAAC 3752009 Query 75325 CCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAA 75384 ||||||||||||||||| || |||||||||| | ||| ||||| |||| || || Sbjct 3752008 TCTCTTCAATGCTGGTACCCCGCAACCGCAGATGGCGTCTTGTTTCCTCATCGACATGAA 3751949 Query 75385 GGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTG 75444 |||||| || | ||||| || | || | | | ||||| || || ||| Sbjct 3751948 AGAGGACAGCATTGAGGGTATTTACGATACCTTGAAGACCTGTGCCTTGATTTCGAAGAC 3751889 Query 75445 GGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGG 75504 ||| || || || ||| || || | ||| | | ||||||| ||| ||| || Sbjct 3751888 GGCGGGAGGCATCGGGCTGAACGTACATCGTATCAGAGCCACCGGCTCTTACATTGCCGG 3751829 Query 75505 GACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCG 75564 |||||||| || | || || | || ||||| ||||| || || ||| || | Sbjct 3751828 CACAAATGGATCTTCCAACGGGATCGTGCCTATGCTCCGCGTCTTCAATAACACCGCAAG 3751769 Query 75565 CTATGTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAACC 75618 ||||| | |||| || ||| || ||| | | |||| |||||| | || || Sbjct 3751768 ATATGTCGACCAAGGAGGTAACAAGCG--GCCAGGTG-CGTTCGCCGTCTACCTTGAGCC 3751712 Query 75619 ATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGC 75678 ||||| |||||| || | |||||| | || || || || || || | || || | Sbjct 3751711 CTGGCACGCCGATGTCTTCGAGTTCTTGGACTTGCGCAAGAATCACGGCAAGGAGGAAGT 3751652 Query 75679 TCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGA 75738 || | || ||||| | | | || |||| ||||| || ||||||||||| || || Sbjct 3751651 CCGCGCCCGTGACCTCTTCTTAGCTCTTTGGACCCCAGATCTCTTCATGAAGCGTGTCGA 3751592 Query 75739 GGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGT 75798 | || || ||||| | || || || || | | || || || || | |||| Sbjct 3751591 GAAGAATGCCGAATGGACGCTGTTTTGCCCCAATGAAGCTCCGGGCCTGGCTGACGTATA 3751532 Query 75799 GGGTGAGGAGTTTGAAGCCCTCTA 75822 ||||| |||||||| |||||||| Sbjct 3751531 CGGTGACGAGTTTGAGGCCCTCTA 3751508 Score = 113 bits (124), Expect = 5e-20 Identities = 125/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 75887 ATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAAC 75946 |||||| || | ||||||||||| || | || | ||||| ||||| || || |||||| Sbjct 3751388 ATTCTCGAAGCCCAGACGGAGACCGGCAACCCCTTCATGCTGTACAAAGACGCGTGTAAC 3751329 Query 75947 AAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATT 76006 ||||| |||||||||||| | || ||||| ||||| ||||| ||||| |||||| Sbjct 3751328 CGCAAGAGCAACCAAAAGAATCTCGGCACAATTCGCAGCTCGAATCTCTGCACCGAAATT 3751269 Query 76007 TTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATC 76053 | ||||| || | |||||| || |||||||||||||| || Sbjct 3751268 GTCGAGTATACTGCACCAGATGAGGTAGCAGTTTGCAATTTGGCTTC 3751222 >seq1 Length=10671843 Score = 93.3 bits (102), Expect = 5e-14 Identities = 226/339 (67%), Gaps = 20/339 (6%) Strand=Plus/Minus Query 13559 CCCAAGTTGGATGACGCGAACAAGGCGGGTACGGCACAATCTGGAAA---GTGTACTCTC 13615 |||||| | ||| || ||||| || |||||| | | |||| | |||||| | Sbjct 351626 CCCAAGCTTACTGATGCCAACAAAGCTGGTACGAAAGA---TGGATACCAGTGTACCTTG 351570 Query 13616 ATTGTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCTCTGTCGTTGGT 13675 || | || || || |||||||||||| || || | || || | |||||||||||| Sbjct 351569 ATCCTGACGGAAGGCGATTCGGCTAAAGGTCTGGCAATGGCAGGGCGCTCTGTCGTTGGG 351510 Query 13676 CGTGATCACTACGGTGTGTTCCCACTTCGCGGTAAATGTAAGAATGTTCGGGACGCTTCG 13735 | ||||| || ||||| ||||| ||||| ||||| | |||||||| ||||| ||| Sbjct 351509 CCTGATCTCTTTGGTGTTTTCCCCCTTCGTGGTAAGCTTCTCAATGTTCGAGACGCCTCG 351450 Query 13736 GTGGCACAGCTCACATCAAACCAGGAGTTCAACGATCTCAAGAAGATCCTTGGTCTTCA- 13794 || | ||| || | ||| |||| | | | |||||||| || | || ||| | Sbjct 351449 GTTGACCAGATCTCGAAGAACGCGGAGATACAAAACATCAAGAAGTTCATAGGGCTTAAG 351390 Query 13795 -ACAAGGAAAAGACTACCAAGATGTTTCTGAA-----CTTCGCTATGGTCGTCTTATGAT 13848 ||||| | || ||||| || ||| | || |||||||| | | ||||| Sbjct 351389 CACAAG--ACGGATTACCAGGA-----CTGCAAGAGTCTCCGCTATGGACACATCATGAT 351337 Query 13849 TATGACAGATGCCGATAATGATGGTTCTCACATCAAGGG 13887 ||||| ||| ||| |||| ||| || ||||| || Sbjct 351336 CATGACGGATCAGGATCATGACGGTAGCCATATCAAAGG 351298 Score = 91.5 bits (100), Expect = 2e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 65069 CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCAT 65128 |||| || | |||||| |||| || || ||| |||||||||||||| ||| || | Sbjct 3823099 CCTTTGCTCAACGCCTTGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTTAGCGGTTCTT 3823158 Query 65129 TCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATG 65188 || | || | ||| | |||||||| ||||| ||||| || || ||||||||| | Sbjct 3823159 TCGCTTCCATCTTCTGGCTTAAGAAGCGCGGTCTTATGCCGGGTCTGACCTTCTCAAACG 3823218 Query 65189 AACTTATTTCCCGAGATGAGGGTCTCCA 65216 ||||||| || || || |||||||| || Sbjct 3823219 AACTTATCTCTCGCGACGAGGGTCTTCA 3823246 Score = 82.4 bits (90), Expect = 9e-11 Identities = 212/317 (67%), Gaps = 6/317 (2%) Strand=Plus/Plus Query 175186 TTCAGTGATGTTGAGGGGATTGACGCCGCCAAAGATG-AACTTGAAGAGATTGTGGATTT 175244 |||| ||||||| ||| || |||| || || |||| || || ||| ||||| || Sbjct 5603364 TTCAAGGATGTTGCGGGTATGGACGAAGCGAA-GATGGAAATTATGGAGTTTGTGAGCTT 5603422 Query 175245 TCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGCGCCCTTCT 175304 | | || |||| | |||| || || || ||||| || || || ||| |||| Sbjct 5603423 TTTGAAAGAACCAGGTCAATATCAGAGACTAGGCGCAAAGATACCTCGCGGTGCCATTCT 5603482 Query 175305 CGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAA 175364 | ||| ||| |||||||| ||||| || || || |||| || || || ||| Sbjct 5603483 ATCTGGTCCGCCTGGTACGGGTAAGACGCTACTGGCGAAGGCCACAGCCGGGGAGTCAGG 5603542 Query 175365 TGTCCCATTCATCCAGTGCTCTGCCGCAA--ACTTTGTGGAGATGTTTGTTGGTGTGGGT 175422 || || ||| || |||| || || || | || || || ||||| || || || ||| Sbjct 5603543 AGTACCTTTCTTC-AGTG-TCAGCGGCTCTGAGTTCGTAGAAATGTTCGTCGGAGTCGGT 5603600 Query 175423 GCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTC 175482 || | || || || || || | || |||| | ||||| |||||| || | ||| Sbjct 5603601 CCCTCTCGAGTGCGAGACCTTTTCGCAAACGCCAGGAAAAATACACCATGCATCATTTTC 5603660 Query 175483 ATTGATGAGATTGATGC 175499 |||||||| |||||||| Sbjct 5603661 ATTGATGAAATTGATGC 5603677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569547800160