Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq1 488 7e-133 seq3 221 2e-52 seq2 179 5e-40 seq5 109 7e-19 seq4 102 1e-16 >seq1 Length=10671843 Score = 488 bits (540), Expect = 7e-133 Identities = 1036/1535 (67%), Gaps = 16/1535 (1%) Strand=Plus/Minus Query 195351 ATGATCGTGTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTG 195410 |||| || | || || || | || ||||| || ||||| || || || |||| ||||| Sbjct 5945629 ATGACCGCATTGAAATCATTGCCAACGACCAGGGCAACCGGACGACCCCGTCGTTCGTTG 5945570 Query 195411 CCTTTACAGATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACC 195470 | || || || | || |||||| | || || | || || || ||| || ||||||| Sbjct 5945569 CTTTCACCGACACCGAGCGTCTCATCGGCGACTCAGCCAAGAACCAGGTCGCCATGAACC 5945510 Query 195471 CTATCAATACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAG 195530 | | || || ||||| || || |||||||| || ||||| || || | ||| | | Sbjct 5945509 CGACAAACACAGTCTTCGATGCCAAGCGTCTCATCGGTCGTAAATTCGCCGATGCTGAGG 5945450 Query 195531 TCCAAGACGATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTA 195590 | || | ||| || ||| | | | | |||| || | ||||| ||||| Sbjct 5945449 TGCAGGCCGACATGAAGCATTTCCCGTTCAAAGTCGTA---GAGAAGGCTGGGAAGCCAG 5945393 Query 195591 TGATTAATGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTA 195650 |||| | || || || | || |||| || |||| | || ||||| || || || | Sbjct 5945392 TGATCCAGGTCGAGTTCAAGGGCGAGACCAAGTCATTTACACCAGAAGAGATCTCATCAA 5945333 Query 195651 TGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATG 195710 |||| |||| ||||||| |||||| || || || | | ||||| || || || | | Sbjct 5945332 TGGTCTTGACCAAGATGAGGGAGACCGCCGAGTCATACTTGGGTGGCACCGTCAACAACG 5945273 Query 195711 CAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTG 195770 | || || ||||| || || ||||||| || || || || || || |||||||| |||| Sbjct 5945272 CCGTCGTCACTGTCCCCGCCTACTTCAACGACTCCCAGCGCCAAGCAACAAAGGATGCTG 5945213 Query 195771 CTGCTATTGCGGGTCTAAACTGTCTTA-GAATTATCAATGAACCAACAGCGGCTGCAATT 195829 | || || ||||||||| ||| || | |||||||| || || || || ||||| ||| Sbjct 5945212 GTCTGATCGCTGGTCTAAAC-GTCCTACGTATTATCAACGAGCCCACCGCCGCTGCTATT 5945154 Query 195830 GCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGT 195889 || || ||||| |||||||| | || | || ||||| | || || || | ||| Sbjct 5945153 GCCTACGGTCTTGACAAGAAAACTGAGGGCGAGCGCAATGTTCTCATATTCGACTTGGGT 5945094 Query 195890 GGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCT 195949 ||||| || || ||||||||||| | | || || | ||||| ||||| || ||| | Sbjct 5945093 GGTGGAACCTTCGATGTCTCACTCTTGACCATCGAGGAGGGTATTTTCGAGGTCAAGTCG 5945034 Query 195950 ACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTT 196008 ||||| ||||| || ||| | || ||||| || ||||| || || | || || Sbjct 5945033 ACTGCCGGTGACACGCATTTGGGCGGTGAGGACTTCGACAACCGCCTGGTGAACCACTTC 5944974 Query 196009 GTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCG 196068 ||| | |||||| || ||| | ||||| ||| |||| || || | ||||| || Sbjct 5944973 GTC-AACGAGTTCAAGCGCAAGCACAAGAAGGATCTTTCCACCAACGCTCGTGCTCTGCG 5944915 Query 196069 TCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAAT 196128 ||| || | || || || || || |||||||| |||||||| || |||| ||||| Sbjct 5944914 TCGTCTCCGAACAGCTTGCGAGCGGGCCAAACGCACTCTCTCATCATCGGCACAAACCTC 5944855 Query 196129 GGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACG 196188 | |||| || || || | | || || || |||||||| || | || |||||||| || Sbjct 5944854 GATTGAAATCGACTCCCTATACGAAGGTATCGACTTCTACACCTCCATCACCCGTGCCCG 5944795 Query 196189 TTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACT 196248 ||| || ||| | | || |||| | ||||| |||||||| | || || Sbjct 5944794 TTTCGAGGAGCTTTGCCAGGACCTGTTCCGCTCCACCATGGAGCCTGTTGAGCGTGTCCT 5944735 Query 196249 TCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAAC 196308 ||||||||| ||||| || ||||| || | || || ||| | || || || || || Sbjct 5944734 TCGTGACGCCAAGATCGACAAGTCCTCCGTCCACGAGATCGTCTTGGTCGGTGGTTCCAC 5944675 Query 196309 CCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAA 196368 ||||||||| ||||| || || | |||| ||||||||| || || |||| Sbjct 5944674 CCGTATTCCCAAGATCCAGAAGCTTGTTTCCGACTTCTTCAACGGCAAGGAGCCCAACAG 5944615 Query 196369 AACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTC 196428 | |||||||| ||||| || || || || ||||| ||||| ||||| || || ||||| Sbjct 5944614 GTCAATCAACCCCGATGAGGCTGTCGCATACGGTGCCGCCGTCCAGGCCGCCATCCTCTC 5944555 Query 196429 AGGTGTTGACA-ATAAT--AA--CGTCCAA-GATCTTCTGCTACTTGATGTTGCACCCGT 196482 || ||||| | || || || |||| || | || || || ||||| | || | Sbjct 5944554 CGG---TGACACCTCATCCAAGTCGACCAACGAAATCCTACTTCTCGATGTCTCTCCATT 5944498 Query 196483 ATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAAC 196542 ||||| ||| | || || || |||||||| ||||| | | || | ||||||| || Sbjct 5944497 GTCCCTTGGTATCGAGACCGCTGGTGGTGTCATGACGGCACTCATCAAGCGGAACACCAC 5944438 Query 196543 TATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCA 196602 || || || |||||| | || || || || | || || || || || || || Sbjct 5944437 CATCCCAACAAAGAAGTCTGAGGTGTTCTCGACATTCTCTGACAACCAGCCGGGAGTGTT 5944378 Query 196603 TATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTT 196662 || || || | || || || || | ||| | ||||| ||| | ||||| || | || Sbjct 5944377 GATCCAGGTCTTCGAGGGCGAGCGTGCTCGTACCAAGGACAACAACCTACTGGGCAAGTT 5944318 Query 196663 CGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGA 196722 ||| | || || || ||| | || || | |||||||| || ||| | ||| |||||| Sbjct 5944317 CGAGCTTACTGGTATCCCACCCGCTCCACGTGGTGTTCCTCAAATTGAGGTTACCTTCGA 5944258 Query 196723 TATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGA 196782 | | ||||| || || || | |||||| | ||| || |||| | || || | | Sbjct 5944257 TCTTGACGCCAACGGTATCATGAACGTCTCCGCTCTCGAGAAGGGCACCGGGAAGACCAA 5944198 Query 196783 AAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGT 196842 ||||| || || ||||| |||||||| || || || ||||| || || || |||||| | Sbjct 5944197 CAAGATCGTTATCACCAACGACAAGGGACGTCTGTCGAAGGAAGATATCGAGCGTATGTT 5944138 Query 196843 TCAAGATGCGGAAAAGTACAGGGAAGAAGACGAGG 196877 || || || ||||||| || || || |||| Sbjct 5944137 GGCTGAGGCCGAGAAGTACAAGGCCGAGGATGAGG 5944103 Score = 134 bits (148), Expect = 2e-26 Identities = 139/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 171870 CTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAAT 171929 ||| || || ||||| || || || || |||||||||||||| || ||| |||||||| Sbjct 8978420 CTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTCGAATCGAGCGACACAAT 8978361 Query 171930 CGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACT 171989 ||| || ||||| |||| || || || ||||||||||| ||||| || ||||| ||| | Sbjct 8978360 CGACAATGTCAAATCCAAAATCCAGGACAAGGAAGGCATCCCACCGGACCAGCAGCGATT 8978301 Query 171990 TATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAA 172049 || ||||| || || ||| | || ||||| ||||| || | || |||||| | || || Sbjct 8978300 GATCTTTGCGGGCAAGCAGTTGGAGGATGGCCGTACACTTTCCGACTACAACATCCAGAA 8978241 Query 172050 GG 172051 || Sbjct 8978240 GG 8978239 Score = 86.0 bits (94), Expect = 8e-12 Identities = 148/209 (71%), Gaps = 7/209 (3%) Strand=Plus/Minus Query 60474 ATGAAGACCTTCGTCACGACTAATAAGTTCATTACTGAAACAAAGTCCGGGAAGTAGACC 60533 ||||||||| ||||| ||| |||||||| || ||| || || || | ||||| Sbjct 3823247 ATGAAGACCCTCGTCGCGAGAGATAAGTTCGTTTGAGAAGGTCAGACCCGGCATAAGACC 3823188 Query 60534 CCGCTTCTTTAACCAATATACAGCACAGAACGAACCACTGAAAAAGATACCCTCTACACA 60593 |||||||| | ||| | | | | ||| ||||| || || ||||||||||| ||| Sbjct 3823187 GCGCTTCTTAAGCCAGAAGATGGAAGCGAAAGAACCGCTAAAGAAGATACCCTCAACAGC 3823128 Query 60594 CGCAAACGCAAAAAGACGTTCAGCAAATGGTCTAGAT-TTGTC---AAACCATTTCATGG 60649 || || |||| ||| |||| |||||| ||| || | || || | |||||| || | Sbjct 3823127 AGCGAAGGCAACAAGGCGTTGAGCAAA-GGTAGAGTTCTTATCTTGGATCCATTTGATAG 3823069 Query 60650 CCCATTCAGCCTTTCGTTC-GATACAAGG 60677 |||| || | ||||| | | ||||||||| Sbjct 3823068 CCCAGTC-GGCTTTCTTGCGGATACAAGG 3823041 >seq3 Length=5817774 Score = 221 bits (244), Expect = 2e-52 Identities = 486/722 (67%), Gaps = 15/722 (2%) Strand=Plus/Plus Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778 |||||||| |||||||||| || ||||| ||||| ||||| ||||||| ||| ||| Sbjct 252342 ACTGTACCAGCTTACTTCAACGACAACCAACGTCAGGCAACAAAAGACGCTGGTGCCATT 252401 Query 195779 GCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGT 195838 || | ||| | || | |||||||| |||||||| || || || ||||| || ||| Sbjct 252402 GCTGATCTGCAAGTCCTCCGGATTATCAACGAACCAACCGCTGCCGCGATTGCGTACGGT 252461 Query 195839 CT--GGACAAGAACAAG---GACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTG 195893 || || | | |||| || | || |||||| |||||| ||||||||||| | Sbjct 252462 CTAGGGTCTGG--CAAGTCAGAGAAGGAGCGAAATGTTCTGATCTACGATCTCGGTGGAG 252519 Query 195894 GTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTG 195953 | || || |||||||| ||| | |||| | || ||| | || || |||||||||| Sbjct 252520 GAACTTTCGATGTCTCTCTTTTGCATATCCAGGGCGGTGTCTTTACCGTCAAGGCTACTG 252579 Query 195954 CTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTCTG 196013 ||||||| ||||| | ||||| | || ||||| || || || || || Sbjct 252580 CTGGTGACACTCACTTGGGTGGCCAGGACTTCGACACAAACCTGCTTGAGCACTTCAAGA 252639 Query 196014 ATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGC 196073 | || |||| || |||| |||||||| || || || |||| | ||||| || || | Sbjct 252640 AGGAATTCCAGCGCAAGACCAAGAAAGACATGTCGGGCGATCCACGTGCTCTACGACGTC 252699 Query 196074 TTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGG--CTCAAACAATGGT 196131 || |||| || ||||| ||||| || || || || || | | || ||||||| | || Sbjct 252700 TTCGGACGGCTTGTGAGCGTGCTAAGCGTACGCTATC--CAATGGTACTCAAACTACTGT 252757 Query 196132 TGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTT 196191 ||||| || || | || || || |||||| | | || |||||||| || || Sbjct 252758 CGAGATCGACTCTCTCTTCGATGGCGAGGACTTCAACGCTCAAATCACCCGTGCCCGATT 252817 Query 196192 TGAAGAGTTAAACTCTGATTTGTTTA--GGAAGTGTATGGAACCTGTTGAACAAGTACTT 196249 ||| || | ||| || | || | || | || || || ||| | || || | Sbjct 252818 TGAGGACCTTAACGCTAAGGCCTTCAATGGCA--CCATCGACCCAGTTCAGCAGGTCTTG 252875 Query 196250 CGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACC 196309 || ||||| | || ||| || ||||| || ||||| ||||| || ||||| ||| Sbjct 252876 AAGGATGCAAACTTAGACAAGAGCAAAGTTGACGAGATTGTACTTGTTGGTGGATCTACC 252935 Query 196310 CGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAA 196369 |||||||| | ||| ||| || | || || ||| || || | | | || Sbjct 252936 CGTATTCCCAGGATACAAAAGCTCCTCAGCGACTACTTTGATGGGAAGAAGCTCGAGAAG 252995 Query 196370 ACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCA 196429 | |||||||| || || || ||||| || ||||| || |||||||||| ||| || || Sbjct 252996 AGCATCAACCCTGACGAGGCTGTTGCCTACGGTGCCGCTGTTCAGGCTGGTATCCTTTCT 253055 Query 196430 GG 196431 || Sbjct 253056 GG 253057 >seq2 Length=7009248 Score = 179 bits (198), Expect = 5e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919 ||||||| ||||| || || || || ||||| || ||||| |||||||| |||||||||| Sbjct 3059174 GTATGCAGATCTTCGTCAAGACACTGACTGGCAAGACTATTACCCTCGAAGTTGAGTCGT 3059233 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979 ||||||| ||||| || | || | ||||| || ||||| |||||||| ||||| |||| Sbjct 3059234 CAGACACCATCGACAATGTGAAGTCGAAGATACAGGATAAAGAAGGCATCCCACCGGATC 3059293 Query 171980 AGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACA 172039 | || || || || ||||| || || ||||| || ||||| | || || | ||||||| Sbjct 3059294 AACAGCGTCTCATATTTGCCGGCAAGCAGCTGGAGGATGGGAGGACACTTTCCGATTACA 3059353 Query 172040 ACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 || |||| || ||||| || || |||||||| || | || || ||||| Sbjct 3059354 ACATTCAGAAAGAGTCAACCCTCCACCTTGTCCTTCGTCTACGTGGTGG 3059402 Score = 172 bits (190), Expect = 7e-38 Identities = 169/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 171872 TTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCG 171931 ||||||| || || |||||||| || |||||| | ||||| || || || || || |||| Sbjct 3058958 TTGTGAAGACGCTCACTGGAAAGACCATCACCTTGGAGGTGGAATCCTCGGATACCATCG 3059017 Query 171932 ATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTA 171991 | || |||| || ||||| || || ||||| |||||||| || |||||||| || | | Sbjct 3059018 ACAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCTCCAGATCAGCAGCGCTTGA 3059077 Query 171992 TTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGG 172051 | ||||| || || |||||||| ||||||||||| || |||| |||||| ||||||||| Sbjct 3059078 TCTTTGCCGGCAAGCAGCTTGAGGATGGACGTACTCTGTCTGACTACAACATTCAAAAGG 3059137 Query 172052 AGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 | || ||||| ||||| || || | || || || ||| Sbjct 3059138 AATCCACTCTTCACCTCGTCCTTCGTCTCCGTGGCGGT 3059175 Score = 163 bits (180), Expect = 4e-35 Identities = 158/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 171886 ACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCC 171945 || || || || |||||||| ||||| ||||| || ||||| |||||||| |||| || Sbjct 3058689 ACCGGCAAGACCATCACCCTTGAGGTGGAGTCTTCGGACACCATCGATAATGTCAAGTCC 3058748 Query 171946 AAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAA 172005 |||||||| || |||||||||||||| || |||||||| || | || || ||||| || Sbjct 3058749 AAGATTCAGGACAAGGAAGGCATTCCCCCGGATCAGCAGCGCTTGATCTTCGCTGGCAAG 3058808 Query 172006 CAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACAC 172065 ||||| ||||| || ||||| || | || |||||| |||| |||||||| ||||| ||| Sbjct 3058809 CAGCTCGAAGACGGCCGTACTCTATCGGACTACAACATTCAGAAGGAGTCCACTCTTCAC 3058868 Query 172066 CTTGTTCTAAGGCTTCGGGGTGG 172088 | || ||| | || || || || Sbjct 3058869 TTGGTCCTACGTCTCCGCGGAGG 3058891 Score = 136 bits (150), Expect = 5e-27 Identities = 170/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||| |||||||| || || ||||| ||||| || |||||| | || |||||| Sbjct 3059627 GTGGTATGCAGATCTTTGTCAAGACGCTTACCGGAAAGACGATCACCTTGGAAGTTGAGA 3059686 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 || ||||| || || ||| | || |||||| || || || || || || || || | Sbjct 3059687 GTTCCGACACGATTGACAACGTTAAGAGCAAGATCCAGGACAAAGAGGGTATCCCGCCGG 3059746 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 | ||||| || | ||||||||||| || ||||| || ||||| || || | | |||| Sbjct 3059747 ACCAGCAGCGTTTGATTTTTGCTGGGAAGCAGCTGGAGGATGGCCGAACGTTGTCGGATT 3059806 Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 ||||| | || |||||| || || || | || || |||||||| || ||| Sbjct 3059807 ACAACATCCAGAAGGAGAGCACCCTGCATTTGGTGCTTAGGCTTCGTGGCGGT 3059859 Score = 132 bits (146), Expect = 6e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || || |||||||| || || || || || || || || || ||| Sbjct 3059404 ATGCAGATCTTCGTAAAGACGCTTACTGGGAAGACAATAACGCTGGAAGTCGAATCATCA 3059463 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||||||||| ||| |||| | ||||| ||||| || || || || ||||| || || Sbjct 3059464 GACACAATCGACAACGTCAAGTCGAAGATCCAAGACAAAGAGGGTATCCCACCAGACCAA 3059523 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || ||| | || || || || || ||| | ||||| || || || || |||||||||| Sbjct 3059524 CAGCGATTGATCTTCGCCGGCAAGCAGTTGGAAGACGGCCGGACACTGAGTGATTACAAC 3059583 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 | ||||| ||| || | ||| | ||||| | || || |||||| Sbjct 3059584 ATCCAAAAAGAGAGCACATTGCACTTGGTTCTTCGTCTGCGCGGTGGT 3059631 >seq5 Length=2817054 Score = 109 bits (120), Expect = 7e-19 Identities = 248/366 (68%), Gaps = 9/366 (2%) Strand=Plus/Plus Query 195626 TTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGA-ATC 195684 ||| | ||||||||| |||| | ||||| | ||||||||||||| || || | | Sbjct 1477882 TTTACGCCCGAAGAAGTTTCCGCCATGGTCCTTGGGAAGATGAAGGAGATCGCCGAGAGC 1477941 Query 195685 TTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTC 195744 | || | || || | || | | || ||||| || || || || ||||||| || Sbjct 1477942 TATC-TAGGAAAGAAGGTCGATCACGCCGTTGTCACGGTCCCAGCATACTTCAACGACAA 1478000 Query 195745 ACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTAT 195804 || | || || ||||||||||||| | || || ||| | ||| |||| | || | Sbjct 1478001 CCAGAGGCAAGCTACAAAGGACGCTGGCGTCATCGCTGGTTTGAACGTTCTTCGCGTTGT 1478060 Query 195805 CAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGA--T 195862 ||| || || || ||||| || || || || |||||||||||| |||| ||||| Sbjct 1478061 CAACGAGCCCACCGCGGCCGCGATCGCGTACGGTCTGGACAAG---AAGGGTGAAGAGCG 1478117 Query 195863 AAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATT 195922 | || ||| | | | ||| | ||||| ||||| || ||||| || || ||| || Sbjct 1478118 CCAGAT-TATCG-TGTATGACTTGGGTGGAGGTACTTTCGATGTTTCTCTCCTCTCCATC 1478175 Query 195923 GAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGAT 195982 || ||| | || || || | ||| || |||||||| || || | || || || ||| Sbjct 1478176 GACAACGGTGTTTTTGAGGTCATGGCAACAGCTGGTGACACCCACTTGGGAGGAGAGGAT 1478235 Query 195983 TTCGAT 195988 |||||| Sbjct 1478236 TTCGAT 1478241 >seq4 Length=4557415 Score = 102 bits (112), Expect = 1e-16 Identities = 225/332 (68%), Gaps = 18/332 (5%) Strand=Plus/Minus Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721 || ||||||||||| || || | ||| | || | || || ||| || || ||| Sbjct 4172707 AAAATGAAGGAGACGGCAGAGGCGCATATGAGCAAGAGCGTCAAGAATGGTGTCGTCACT 4172648 Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781 || || || || |||| || || ||||| ||||| || || ||||| | || || Sbjct 4172647 GTTCCAGCCTATTTCAACGACTCTCAACGTCAGGCTACCAAAGACGCAGGCCAAATCGCT 4172588 Query 195782 GGTCTAAACTGT-CTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCT 195840 ||||| || ||| || | | |||| ||||| || ||||| || ||||||| ||||| Sbjct 4172587 GGTCTCAA-TGTCCTCCGTGTGGTCAACGAACCTACCGCGGCCGCGCTTGCTTACGGTCT 4172529 Query 195841 GGACAAGAACAAGGACGAAGATAAAAATGT-ATT--GATCTTTGATCTCGGTGGTGGTAC 195897 ||| ||| |||||| | ||| ||| | ||| || | |||||||| || Sbjct 4172528 GGAAAAG---------GAAGATGATCGTGTGATTGCGGTCTACGACTTGGGTGGTGGAAC 4172478 Query 195898 GTTTGATGTCTCACTTCTCAATAT--TGAAGGTGGTATATTCGAAGTAAAGGCTACTGCT 195955 || ||| |||| ||||| | || |||| || | ||||| || ||| | || | Sbjct 4172477 TTTCGATATCTCGGTTCTCGAGATCCAGAAG--GGCGTCTTCGAGGTCAAGTCCACCAAT 4172420 Query 195956 GGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 |||||||| ||||| || |||||||| ||||| Sbjct 4172419 GGTGATACCCATCTCGGCGGTGAAGACTTCGA 4172388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657862342437040