Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1 123 7e-23 seq7 84.2 6e-11 >seq1 Length=10671843 Score = 123 bits (136), Expect = 7e-23 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496 |||||||||| |||||| | ||||||||||| ||||||||||| || ||| | | Sbjct 3823039 TTCCTTGTATCCGCAAGAAAGCCGACTGGGCTATCAAATGGATCCAAGATAAGAACTCTA 3823098 Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556 |||||| || || ||||| || |||| || ||||| || || || || ||| | | Sbjct 3823099 CCTTTGCTCAACGCCTTGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTTAGCGGTTCTT 3823158 Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616 || || || || |||||||| ||||| ||| || | || || ||| || || |||| Sbjct 3823159 TCGCTTCCATCTTCTGGCTTAAGAAGCGCGGTCTTATGCCGGGTCTGACCTTCTCAAACG 3823218 Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657 ||||||| || | ||||||| ||||| || || || ||| Sbjct 3823219 AACTTATCTCTCGCGACGAGGGTCTTCATACTGACTTCGCC 3823259 Score = 86.0 bits (94), Expect = 2e-11 Identities = 143/203 (70%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 289026 TTTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAAT 289085 |||||| | ||||||||||| ||||||||||| | || || | ||||| || || | Sbjct 5603687 TTTACCTATTGCATCAATTTCATCAATGAAAATGATGCATGGTGTATTTTTCCTGGCGTT 5603628 Query 289086 TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGA 289145 ||| || | |||| || || || | || | || || |||||||||| || ||||| Sbjct 5603627 TGCGAAAAGGTCTCGCACTCGAGAGGGACCGACTCCGACGAACATTTCTACGAACTCAGA 5603568 Query 289146 --AGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGT 289203 || || || |||| ||| | ||| || || || ||| ||| ||||||| || Sbjct 5603567 GCCGCTGACAC-TGAA-GAAAGGTACTCCTGACTCCCCGGCTGTGGCCTTCGCCAGTAGC 5603510 Query 289204 GTCTTACCTGTTCCAGGTGGTCC 289226 |||||||| || ||||| || || Sbjct 5603509 GTCTTACCCGTACCAGGCGGACC 5603487 >seq7 Length=1695519 Score = 84.2 bits (92), Expect = 6e-11 Identities = 105/141 (74%), Gaps = 5/141 (4%) Strand=Plus/Plus Query 301813 AGAATTTC-TTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGC 301871 ||||| || ||||| ||||| ||||| || || || ||| || | |||||||| Sbjct 279078 AGAATCTCCTTCAAG-CGGGGTACACCCAATGTGACATT---CTTCGAGGAGACACCAGC 279133 Query 301872 AAAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAAT 301931 ||| ||||| || |||||||| | ||| |||| |||||||| || |||||| || | Sbjct 279134 AAAATGGAACGTGTTCAGAGTCATTTGTGTAGCCGGCTCACCGATTGATTGTGCGGCTAG 279193 Query 301932 CATACCAACCATTTCTCCTGG 301952 || ||||||||| ||||| || Sbjct 279194 CACACCAACCATCTCTCCAGG 279214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817467996359