Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq1 123 7e-23
seq7 84.2 6e-11
>seq1
Length=10671843
Score = 123 bits (136), Expect = 7e-23
Identities = 160/221 (72%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496
|||||||||| |||||| | ||||||||||| ||||||||||| || ||| | |
Sbjct 3823039 TTCCTTGTATCCGCAAGAAAGCCGACTGGGCTATCAAATGGATCCAAGATAAGAACTCTA 3823098
Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556
|||||| || || ||||| || |||| || ||||| || || || || ||| | |
Sbjct 3823099 CCTTTGCTCAACGCCTTGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTTAGCGGTTCTT 3823158
Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616
|| || || || |||||||| ||||| ||| || | || || ||| || || ||||
Sbjct 3823159 TCGCTTCCATCTTCTGGCTTAAGAAGCGCGGTCTTATGCCGGGTCTGACCTTCTCAAACG 3823218
Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657
||||||| || | ||||||| ||||| || || || |||
Sbjct 3823219 AACTTATCTCTCGCGACGAGGGTCTTCATACTGACTTCGCC 3823259
Score = 86.0 bits (94), Expect = 2e-11
Identities = 143/203 (70%), Gaps = 4/203 (2%)
Strand=Plus/Minus
Query 289026 TTTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAAT 289085
|||||| | ||||||||||| ||||||||||| | || || | ||||| || || |
Sbjct 5603687 TTTACCTATTGCATCAATTTCATCAATGAAAATGATGCATGGTGTATTTTTCCTGGCGTT 5603628
Query 289086 TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGA 289145
||| || | |||| || || || | || | || || |||||||||| || |||||
Sbjct 5603627 TGCGAAAAGGTCTCGCACTCGAGAGGGACCGACTCCGACGAACATTTCTACGAACTCAGA 5603568
Query 289146 --AGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGT 289203
|| || || |||| ||| | ||| || || || ||| ||| ||||||| ||
Sbjct 5603567 GCCGCTGACAC-TGAA-GAAAGGTACTCCTGACTCCCCGGCTGTGGCCTTCGCCAGTAGC 5603510
Query 289204 GTCTTACCTGTTCCAGGTGGTCC 289226
|||||||| || ||||| || ||
Sbjct 5603509 GTCTTACCCGTACCAGGCGGACC 5603487
>seq7
Length=1695519
Score = 84.2 bits (92), Expect = 6e-11
Identities = 105/141 (74%), Gaps = 5/141 (4%)
Strand=Plus/Plus
Query 301813 AGAATTTC-TTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGC 301871
||||| || ||||| ||||| ||||| || || || ||| || | ||||||||
Sbjct 279078 AGAATCTCCTTCAAG-CGGGGTACACCCAATGTGACATT---CTTCGAGGAGACACCAGC 279133
Query 301872 AAAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAAT 301931
||| ||||| || |||||||| | ||| |||| |||||||| || |||||| || |
Sbjct 279134 AAAATGGAACGTGTTCAGAGTCATTTGTGTAGCCGGCTCACCGATTGATTGTGCGGCTAG 279193
Query 301932 CATACCAACCATTTCTCCTGG 301952
|| ||||||||| ||||| ||
Sbjct 279194 CACACCAACCATCTCTCCAGG 279214
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471817467996359
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |