Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq1 118 1e-20
seq3 111 2e-18
>seq1
Length=10671843
Score = 118 bits (130), Expect = 1e-20
Identities = 95/115 (83%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
|| |||||||| || || |||||||| || || ||| | || |||||| |||| || |||
Sbjct 1864121 GCGGCCAACTATCTTGATATCAAGCCCCTCCTTGATGTCGGCTGCAAGACTGTTGCAAAC 1864062
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300
||||||||||||||||| || ||||||||||||||||| || ||||| || |||
Sbjct 1864061 ATGATCAAGGGCAAGTCTCCAGAGGAGATCCGCAAGACATTCAACATTCAGAACG 1864007
Score = 95.1 bits (104), Expect = 1e-13
Identities = 163/235 (69%), Gaps = 4/235 (2%)
Strand=Plus/Minus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| || || || ||| |||||| |||||||||||||| | | || |||
Sbjct 3823555 GCCTTCTGGTAGTCACCAACCCGCTTCTCGAAGAAGTTGGTCTTGCCGGCCAATGATATC 3823496
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
||||||| | ||| || || | || ||||||| ||| | | ||||| | |
Sbjct 3823495 GACTCCATGAAGTCGAATGGATTTGTCGCGTTGTAGTACTTCTGGTTACCGAGAGCTAGG 3823436
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA-- 868868
|| || || || || || || |||||||| || ||| || || |||||||| || |
Sbjct 3823435 AGTAGACGATCTGCCACGAATTCGATGTATTGCTTCATCAGACCCGCGTTCATACCTAAC 3823376
Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTC 868923
|||||| | || || | ||| ||| ||||||| |||||| |||||||||
Sbjct 3823375 AGAGCGCAA--GGTAGAGCCTCTGTCAAGAACTCTTGCTCGATGGTGACGGCCTC 3823323
>seq3
Length=5817774
Score = 111 bits (122), Expect = 2e-18
Identities = 213/312 (68%), Gaps = 8/312 (3%)
Strand=Plus/Plus
Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125
|||||||| || | || |||| || |||||||||||||| ||||||| ||||||||
Sbjct 3751757 TGGTCGACATATCTTGCGGTGTTATTGAAGACGCGGAGCATAGGCACGATCCCGTTGGAA 3751816
Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGC--GCACCTTGTGCG--CGGCAAA 1630181
|| || ||||| || | ||| | ||||| ||| | || ||| || | ||
Sbjct 3751817 GATCCATTTGTGCCGGCAATGTAAGAGCCGGTGGCTCTGATACGATGTACGTTCAGC--- 3751873
Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241
|||||||| || |||| ||| || || | || || || | || ||||| || ||
Sbjct 3751874 -CCGATGCCTCCCGCCGTCTTCGAAATCAAGGCACAGGTCTTCAAGGTATCGTAAATACC 3751932
Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGT 1630301
||| || ||| | |||||||| | ||| || || |||| | ||||| |||| ||
Sbjct 3751933 CTCAATGCTGTCCTCTTTCATGTCGATGAGGAAACAAGACGCCATCTGCGGTTGCGGGGT 3751992
Query 1630302 GCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTA 1630361
|| || |||||||| || |||| || ||||| ||| | | |||||| || ||
Sbjct 3751993 ACCAGCATTGAAGAGAGTTGGCGAGGCGTGTGTGAAGTACTTCTGGGACATGAGGTTATA 3752052
Query 1630362 GGTGGCGAGCAC 1630373
||| |||| ||
Sbjct 3752053 GGTCTCGAGGAC 3752064
Score = 89.7 bits (98), Expect = 6e-12
Identities = 81/101 (80%), Gaps = 1/101 (1%)
Strand=Plus/Minus
Query 1726733 CCGTCGGTGCCGTTCTTGAAGCCGATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGC 1726792
||||| ||||| ||||||||||| | || | | ||| | ||||||| ||||||||||
Sbjct 4080205 CCGTCTGTGCCATTCTTGAAGCCAACGGGGAAGGAGAGTCCAGACGCCAACTCGCGGTGC 4080146
Query 1726793 ACCTGGCTCTCGGTCGTGCGCGCGCCCACGGCGCCCCACGC 1726833
| || ||||| || |||||||| ||||||||| |||||||
Sbjct 4080145 AATTGACTCTCCGTGGTGCGCGCACCCACGGCG-CCCACGC 4080106
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107138625547219
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |