Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1 118 1e-20 seq3 111 2e-18 >seq1 Length=10671843 Score = 118 bits (130), Expect = 1e-20 Identities = 95/115 (83%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || |||||||| || || |||||||| || || ||| | || |||||| |||| || ||| Sbjct 1864121 GCGGCCAACTATCTTGATATCAAGCCCCTCCTTGATGTCGGCTGCAAGACTGTTGCAAAC 1864062 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 ||||||||||||||||| || ||||||||||||||||| || ||||| || ||| Sbjct 1864061 ATGATCAAGGGCAAGTCTCCAGAGGAGATCCGCAAGACATTCAACATTCAGAACG 1864007 Score = 95.1 bits (104), Expect = 1e-13 Identities = 163/235 (69%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || ||| |||||| |||||||||||||| | | || ||| Sbjct 3823555 GCCTTCTGGTAGTCACCAACCCGCTTCTCGAAGAAGTTGGTCTTGCCGGCCAATGATATC 3823496 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 ||||||| | ||| || || | || ||||||| ||| | | ||||| | | Sbjct 3823495 GACTCCATGAAGTCGAATGGATTTGTCGCGTTGTAGTACTTCTGGTTACCGAGAGCTAGG 3823436 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA-- 868868 || || || || || || || |||||||| || ||| || || |||||||| || | Sbjct 3823435 AGTAGACGATCTGCCACGAATTCGATGTATTGCTTCATCAGACCCGCGTTCATACCTAAC 3823376 Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTC 868923 |||||| | || || | ||| ||| ||||||| |||||| ||||||||| Sbjct 3823375 AGAGCGCAA--GGTAGAGCCTCTGTCAAGAACTCTTGCTCGATGGTGACGGCCTC 3823323 >seq3 Length=5817774 Score = 111 bits (122), Expect = 2e-18 Identities = 213/312 (68%), Gaps = 8/312 (3%) Strand=Plus/Plus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 |||||||| || | || |||| || |||||||||||||| ||||||| |||||||| Sbjct 3751757 TGGTCGACATATCTTGCGGTGTTATTGAAGACGCGGAGCATAGGCACGATCCCGTTGGAA 3751816 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGC--GCACCTTGTGCG--CGGCAAA 1630181 || || ||||| || | ||| | ||||| ||| | || ||| || | || Sbjct 3751817 GATCCATTTGTGCCGGCAATGTAAGAGCCGGTGGCTCTGATACGATGTACGTTCAGC--- 3751873 Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 |||||||| || |||| ||| || || | || || || | || ||||| || || Sbjct 3751874 -CCGATGCCTCCCGCCGTCTTCGAAATCAAGGCACAGGTCTTCAAGGTATCGTAAATACC 3751932 Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGT 1630301 ||| || ||| | |||||||| | ||| || || |||| | ||||| |||| || Sbjct 3751933 CTCAATGCTGTCCTCTTTCATGTCGATGAGGAAACAAGACGCCATCTGCGGTTGCGGGGT 3751992 Query 1630302 GCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTA 1630361 || || |||||||| || |||| || ||||| ||| | | |||||| || || Sbjct 3751993 ACCAGCATTGAAGAGAGTTGGCGAGGCGTGTGTGAAGTACTTCTGGGACATGAGGTTATA 3752052 Query 1630362 GGTGGCGAGCAC 1630373 ||| |||| || Sbjct 3752053 GGTCTCGAGGAC 3752064 Score = 89.7 bits (98), Expect = 6e-12 Identities = 81/101 (80%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 1726733 CCGTCGGTGCCGTTCTTGAAGCCGATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGC 1726792 ||||| ||||| ||||||||||| | || | | ||| | ||||||| |||||||||| Sbjct 4080205 CCGTCTGTGCCATTCTTGAAGCCAACGGGGAAGGAGAGTCCAGACGCCAACTCGCGGTGC 4080146 Query 1726793 ACCTGGCTCTCGGTCGTGCGCGCGCCCACGGCGCCCCACGC 1726833 | || ||||| || |||||||| ||||||||| ||||||| Sbjct 4080145 AATTGACTCTCCGTGGTGCGCGCACCCACGGCG-CCCACGC 4080106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107138625547219