Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq2 122 8e-23
seq1 87.8 2e-12
>seq2
Length=7009248
Score = 122 bits (134), Expect = 8e-23
Identities = 155/211 (73%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | || ||||| ||||| || || || || | ||||| || ||
Sbjct 3059632 ATGCAGATCTTTGTCAAGACGCTTACCGGAAAGACGATCACCTTGGAAGTTGAGAGTTCC 3059691
Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| | || |||| ||| | |||||||| |||||||| || || || || || ||
Sbjct 3059692 GACACGATTGACAACGTTAAGA-GCAAGATCCAGGACAAAGAGGGTATCCCGCCGGACCA 3059750
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|| |||||||| ||||| ||||| |||||||||||| ||| |||| ||||| ||
Sbjct 3059751 GCAGCGTTTGATTTTTGCTGGGAAGCAGCTGGAGGATGGCCGAACGTTGTCGGATTACAA 3059810
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTG 24913
||| || ||||| || || || ||||||
Sbjct 3059811 CATCCAGAAGGAGAGCACCCTGCATTTGGTG 3059841
Score = 120 bits (132), Expect = 3e-22
Identities = 149/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || || || || || |||||||| |||||||| || | |
Sbjct 3059176 ATGCAGATCTTCGTCAAGACACTGACTGGCAAGACTATTACCCTCGAAGTTGAGTCGTCA 3059235
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || ||||| || || |||||||| || || || ||||||
Sbjct 3059236 GACACCATCGACAATGTGAAGTCGAAGATACAGGATAAAGAAGGCATCCCACCGGATCAA 3059295
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| ||| | || |||||||| || |||||||||||| ||| | | || ||||| |||
Sbjct 3059296 CAGCGTCTCATATTTGCCGGCAAGCAGCTGGAGGATGGGAGGACACTTTCCGATTACAAC 3059355
Query 24884 ATTCAAAAGGAATCGACACTACAC 24907
||||| || || || || || |||
Sbjct 3059356 ATTCAGAAAGAGTCAACCCTCCAC 3059379
Score = 116 bits (128), Expect = 3e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || ||||| || || || || || ||||| ||||| ||| | |
Sbjct 3059404 ATGCAGATCTTCGTAAAGACGCTTACTGGGAAGACAATAACGCTGGAAGTCGAATCATCA 3059463
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|||||| | || | || || ||||||||||||||||| || || || || || |||
Sbjct 3059464 GACACAATCGACAACGTCAAGTCGAAGATCCAAGACAAAGAGGGTATCCCACCAGACCAA 3059523
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA-TTCGAGAAACATGTCAGATTATAA 24882
|| || |||||||| ||||| || ||| |||| || | || || || ||||| ||
Sbjct 3059524 CAGCGATTGATCTTCGCCGGCAAGCAGTTGGAAGACGGCCGGACAC-TGAGTGATTACAA 3059582
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
||| ||||| || ||| | |||||||| | || ||||||| ||
Sbjct 3059583 CATCCAAAAAGAGAGCACATTGCACTTGGTTCTTCGTCTGCGCGGTGG 3059630
Score = 102 bits (112), Expect = 7e-17
Identities = 136/189 (72%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778
|| ||||| || || || || || || | || || ||| || | || || | || |
Sbjct 3058963 AAGACGCTCACTGGAAAGACCATCACCTTGGAGGTGGAATCCTCGGATACCATCGACAAT 3059022
Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838
|| || |||||||| ||||| || || || ||||| ||||| || || |||||||||
Sbjct 3059023 GTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCTCCAGATCAGCAGCGCTTGATCTTT 3059082
Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898
||||| || ||||| |||||| | | |||| || || |||||||||||||||||
Sbjct 3059083 GCCGGCAAGCAGCTTGAGGATGGACGTACTCTGTCTGACTACAACATTCAAAAGGAATCC 3059142
Query 24899 ACACTACAC 24907
|| || |||
Sbjct 3059143 ACTCTTCAC 3059151
>seq1
Length=10671843
Score = 87.8 bits (96), Expect = 2e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778
|| || || || ||||| || || || ||||| || ||| | | ||||||| | || |
Sbjct 8978413 AAGACCCTCACGGGTAAGACCATCACCCTCGAGGTCGAATCGAGCGACACAATCGACAAT 8978354
Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838
|| ||| || ||||| ||||| ||||| || || || || || || || |||||||||
Sbjct 8978353 GTCAAATCCAAAATCCAGGACAAGGAAGGCATCCCACCGGACCAGCAGCGATTGATCTTT 8978294
Query 24839 GCCGGGAAACAGCTGGAGGAT 24859
|| || || ||| ||||||||
Sbjct 8978293 GCGGGCAAGCAGTTGGAGGAT 8978273
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449897560633960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |