Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq1 113 7e-19
seq3 105 1e-16
>seq1
Length=10671843
Score = 113 bits (124), Expect = 7e-19
Identities = 94/115 (82%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706
|| |||||||| || || |||||||||||||| ||| | || |||||||| || || |||
Sbjct 1864121 GCGGCCAACTATCTTGATATCAAGCCCCTCCTTGATGTCGGCTGCAAGACTGTTGCAAAC 1864062
Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761
| |||||||||||||| || ||||| ||||||||||| || ||||| || |||
Sbjct 1864061 ATGATCAAGGGCAAGTCTCCAGAGGAGATCCGCAAGACATTCAACATTCAGAACG 1864007
>seq3
Length=5817774
Score = 105 bits (116), Expect = 1e-16
Identities = 200/292 (68%), Gaps = 8/292 (3%)
Strand=Plus/Plus
Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600
||||||||||| | || |||| || |||||||||||||| ||||| | ||||||||
Sbjct 3751757 TGGTCGACATATCTTGCGGTGTTATTGAAGACGCGGAGCATAGGCACGATCCCGTTGGAA 3751816
Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCA--CCTTGTGCG--CGGCAAA 2073656
|| || ||||| || | ||| | ||| | ||| | | | ||| || | ||
Sbjct 3751817 GATCCATTTGTGCCGGCAATGTAAGAGCCGGTGGCTCTGATACGATGTACGTTCAGC--- 3751873
Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716
|||||||| || |||| ||| || || | || || | |||| || ||||| || ||
Sbjct 3751874 -CCGATGCCTCCCGCCGTCTTCGAAATCAAGGCACAGGTCTTCAAGGTATCGTAAATACC 3751932
Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGT 2073776
||| || ||| | |||||||| | || || || |||| | ||||| ||| ||
Sbjct 3751933 CTCAATGCTGTCCTCTTTCATGTCGATGAGGAAACAAGACGCCATCTGCGGTTGCGGGGT 3751992
Query 2073777 GCCGGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATG 2073828
|| ||||||||||| || |||| || ||| | ||| |||||||||
Sbjct 3751993 ACCAGCATTGAAGAGAGTTGGCGAGGCGTGTGTGAAGTACTTCTGGGACATG 3752044
Score = 87.8 bits (96), Expect = 3e-11
Identities = 115/158 (73%), Gaps = 1/158 (1%)
Strand=Plus/Minus
Query 2175021 AGAAAGGTGTGTGGCTGCGCGGCGGTGCGCACGGCATCGAGCGCCGTTGCCACGCTGCCG 2175080
|||||| ||| || ||| | ||| | | ||||||| |||| ||| |||||
Sbjct 4080262 AGAAAGTGGTGCGGGTGCTTGACGGCCCCAATTGCATCGATCGCCACATCCAATGTGCCG 4080203
Query 2175081 TCGGTGCCGTTTTTAAACCCGACCGGCAACGGCAGCGCCGACGCCATTTCGCGGTGCACC 2175140
|| ||||| || || || || || || || | || | ||||||| ||||||||||
Sbjct 4080202 TCTGTGCCATTCTTGAAGCCAACGGGGAAGGAGAGTCCAGACGCCAACTCGCGGTGCAAT 4080143
Query 2175141 TGGCTCTCGGTGGTGCGCGCGCCCACGGCGCCCCACGC 2175178
|| ||||| ||||||||||| ||||||||| |||||||
Sbjct 4080142 TGACTCTCCGTGGTGCGCGCACCCACGGCG-CCCACGC 4080106
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916245655378073
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |