Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1 113 7e-19 seq3 105 1e-16 >seq1 Length=10671843 Score = 113 bits (124), Expect = 7e-19 Identities = 94/115 (82%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 || |||||||| || || |||||||||||||| ||| | || |||||||| || || ||| Sbjct 1864121 GCGGCCAACTATCTTGATATCAAGCCCCTCCTTGATGTCGGCTGCAAGACTGTTGCAAAC 1864062 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761 | |||||||||||||| || ||||| ||||||||||| || ||||| || ||| Sbjct 1864061 ATGATCAAGGGCAAGTCTCCAGAGGAGATCCGCAAGACATTCAACATTCAGAACG 1864007 >seq3 Length=5817774 Score = 105 bits (116), Expect = 1e-16 Identities = 200/292 (68%), Gaps = 8/292 (3%) Strand=Plus/Plus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 ||||||||||| | || |||| || |||||||||||||| ||||| | |||||||| Sbjct 3751757 TGGTCGACATATCTTGCGGTGTTATTGAAGACGCGGAGCATAGGCACGATCCCGTTGGAA 3751816 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCA--CCTTGTGCG--CGGCAAA 2073656 || || ||||| || | ||| | ||| | ||| | | | ||| || | || Sbjct 3751817 GATCCATTTGTGCCGGCAATGTAAGAGCCGGTGGCTCTGATACGATGTACGTTCAGC--- 3751873 Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716 |||||||| || |||| ||| || || | || || | |||| || ||||| || || Sbjct 3751874 -CCGATGCCTCCCGCCGTCTTCGAAATCAAGGCACAGGTCTTCAAGGTATCGTAAATACC 3751932 Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGT 2073776 ||| || ||| | |||||||| | || || || |||| | ||||| ||| || Sbjct 3751933 CTCAATGCTGTCCTCTTTCATGTCGATGAGGAAACAAGACGCCATCTGCGGTTGCGGGGT 3751992 Query 2073777 GCCGGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATG 2073828 || ||||||||||| || |||| || ||| | ||| ||||||||| Sbjct 3751993 ACCAGCATTGAAGAGAGTTGGCGAGGCGTGTGTGAAGTACTTCTGGGACATG 3752044 Score = 87.8 bits (96), Expect = 3e-11 Identities = 115/158 (73%), Gaps = 1/158 (1%) Strand=Plus/Minus Query 2175021 AGAAAGGTGTGTGGCTGCGCGGCGGTGCGCACGGCATCGAGCGCCGTTGCCACGCTGCCG 2175080 |||||| ||| || ||| | ||| | | ||||||| |||| ||| ||||| Sbjct 4080262 AGAAAGTGGTGCGGGTGCTTGACGGCCCCAATTGCATCGATCGCCACATCCAATGTGCCG 4080203 Query 2175081 TCGGTGCCGTTTTTAAACCCGACCGGCAACGGCAGCGCCGACGCCATTTCGCGGTGCACC 2175140 || ||||| || || || || || || || | || | ||||||| |||||||||| Sbjct 4080202 TCTGTGCCATTCTTGAAGCCAACGGGGAAGGAGAGTCCAGACGCCAACTCGCGGTGCAAT 4080143 Query 2175141 TGGCTCTCGGTGGTGCGCGCGCCCACGGCGCCCCACGC 2175178 || ||||| ||||||||||| ||||||||| ||||||| Sbjct 4080142 TGACTCTCCGTGGTGCGCGCACCCACGGCG-CCCACGC 4080106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916245655378073