Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq2 105 4e-18
seq1 100 2e-16
seq6 91.5 1e-13
>seq2
Length=7009248
Score = 105 bits (116), Expect = 4e-18
Identities = 153/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821
||| || |||| || | ||||||||||||||| ||||| || ||||| | | || |
Sbjct 3059847 CCTAAGCACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAATCCGACAACGTTCGGCC 3059788
Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881
||| ||||| ||||| || || || |||| || |||||||| |||| | ||||| ||
Sbjct 3059787 ATCCTCCAGCTGCTTCCCAGCAAAAATCAAACGCTGCTGGTCCGGCGGGATACCCTCTTT 3059728
Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTAT 34941
||| | || || || ||| | |||| || ||| || || | ||| ||
Sbjct 3059727 GTCCTGGATCTTGCTCTTAACGTTGTCAATCGTGTCGGAACTCTCAACTTCCAAGGTGAT 3059668
Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|||||||| || || ||||| ||||||||||||||
Sbjct 3059667 CGTCTTTCCGGTAAGCGTCTTGACAAAGATCTGCAT 3059632
Score = 100 bits (110), Expect = 2e-16
Identities = 147/206 (71%), Gaps = 8/206 (4%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| ||||||| ||| ||||| |||||||| ||||| || || | || ||||
Sbjct 3059159 AGGACGAGGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCAGACAGAGTACGTCCATCC 3059100
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||| ||||| ||||||| || ||||| ||| | || | |||||||||||
Sbjct 3059099 TCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGATCTGGAGGAATGCCCTCCTTGTCC 3059040
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| || || ||||| || | ||||| || || || || || | ||| ||
Sbjct 3059039 TGGATCTTAGCCTTGAC--AT--TGTCGATGGTATCCGAGGATTCCACCTCCAAGGTGAT 3058984
Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAA 34967
||||||||| ||||| ||||| ||||
Sbjct 3058983 GGTCTTTCCAGTGAGCGTCTTCACAA 3058958
Score = 96.9 bits (106), Expect = 2e-15
Identities = 139/194 (72%), Gaps = 8/194 (4%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||| ||||| ||| ||||||||||||||| ||||||||||| | || | ||
Sbjct 3058876 AGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGATAGAGTACGGCCGTCT 3058817
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||| || |||||||||| || ||||| || | || | || ||||||||
Sbjct 3058816 TCGAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGATCCGGGGGAATGCCTTCCTTGTCC 3058757
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| || || ||||| || ||||||| || | ||| || |||| ||| ||
Sbjct 3058756 TGAATCTTGGACTTGAC--AT--TATCGATGGTGTCCGAAGACTCCACCTCAAGGGTGAT 3058701
Query 34942 GGTCTTTCCCGTGA 34955
|||||| || ||||
Sbjct 3058700 GGTCTTGCCGGTGA 3058687
Score = 89.7 bits (98), Expect = 3e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| ||| | |||||||| || || ||||| || || || | || | ||
Sbjct 3059615 AGAACCAAGTGCAATGTGCTCTCTTTTTGGATGTTGTAATCACTCAGTGTCCGGCCGTCT 3059556
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|||| ||||| ||||||||||||| ||| || |||||| | || | ||||| |||||
Sbjct 3059555 TCCAACTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGATACCCTCTTTGTCT 3059496
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || |||||| | || | || | ||||| || | ||||| |||
Sbjct 3059495 TGGATCTTCGACTTGACGTTGTCGATTGTGTCTGATGATTCGACTTCCAGCGTTATTGTC 3059436
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| || || || |||||||| |||||||||||
Sbjct 3059435 TTCCCAGTAAGCGTCTTTACGAAGATCTGCAT 3059404
>seq1
Length=10671843
Score = 100 bits (110), Expect = 2e-16
Identities = 135/186 (73%), Gaps = 8/186 (4%)
Strand=Plus/Plus
Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847
||||||| ||||| ||||| || || | || |||| |||| ||||| || || ||||
Sbjct 8978239 CCTTCTGGATGTTGTAGTCGGAAAGTGTACGGCCATCCTCCAACTGCTTGCCCGCAAAGA 8978298
Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907
||| ||| |||||||| | || | || |||||||| | ||||| |||||| ||
Sbjct 8978299 TCAATCGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATTTTGGATTTGAC--AT- 8978355
Query 34908 CTATCGATTCATTGGCC----TCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963
| |||||| | || ||||| || | ||| |||||||| ||||||||||||||
Sbjct 8978356 -TGTCGATTGTGTCGCTCGATTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTG 8978414
Query 34964 ACAAAG 34969
|| |||
Sbjct 8978415 ACGAAG 8978420
>seq6
Length=2243500
Score = 91.5 bits (100), Expect = 1e-13
Identities = 92/120 (77%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
||| |||||||| | ||| ||| ||||| ||||| ||||| || ||| |||| ||||
Sbjct 1182121 CAGCACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATC 1182180
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| |||||||| || ||||||||||| || || ||||| | || | || ||||||||
Sbjct 1182181 TTCGAGTTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCGGGTGGGATACCTTCCTTGTC 1182240
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325692772214333
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |