Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq2 105 4e-18 seq1 100 2e-16 seq6 91.5 1e-13 >seq2 Length=7009248 Score = 105 bits (116), Expect = 4e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821 ||| || |||| || | ||||||||||||||| ||||| || ||||| | | || | Sbjct 3059847 CCTAAGCACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAATCCGACAACGTTCGGCC 3059788 Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881 ||| ||||| ||||| || || || |||| || |||||||| |||| | ||||| || Sbjct 3059787 ATCCTCCAGCTGCTTCCCAGCAAAAATCAAACGCTGCTGGTCCGGCGGGATACCCTCTTT 3059728 Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTAT 34941 ||| | || || || ||| | |||| || ||| || || | ||| || Sbjct 3059727 GTCCTGGATCTTGCTCTTAACGTTGTCAATCGTGTCGGAACTCTCAACTTCCAAGGTGAT 3059668 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||| || || ||||| |||||||||||||| Sbjct 3059667 CGTCTTTCCGGTAAGCGTCTTGACAAAGATCTGCAT 3059632 Score = 100 bits (110), Expect = 2e-16 Identities = 147/206 (71%), Gaps = 8/206 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| ||| ||||| |||||||| ||||| || || | || |||| Sbjct 3059159 AGGACGAGGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCAGACAGAGTACGTCCATCC 3059100 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||| ||||||| || ||||| ||| | || | ||||||||||| Sbjct 3059099 TCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGATCTGGAGGAATGCCCTCCTTGTCC 3059040 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| || | ||||| || || || || || | ||| || Sbjct 3059039 TGGATCTTAGCCTTGAC--AT--TGTCGATGGTATCCGAGGATTCCACCTCCAAGGTGAT 3058984 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAA 34967 ||||||||| ||||| ||||| |||| Sbjct 3058983 GGTCTTTCCAGTGAGCGTCTTCACAA 3058958 Score = 96.9 bits (106), Expect = 2e-15 Identities = 139/194 (72%), Gaps = 8/194 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||||| ||| ||||||||||||||| ||||||||||| | || | || Sbjct 3058876 AGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGATAGAGTACGGCCGTCT 3058817 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || |||||||||| || ||||| || | || | || |||||||| Sbjct 3058816 TCGAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGATCCGGGGGAATGCCTTCCTTGTCC 3058757 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| || ||||||| || | ||| || |||| ||| || Sbjct 3058756 TGAATCTTGGACTTGAC--AT--TATCGATGGTGTCCGAAGACTCCACCTCAAGGGTGAT 3058701 Query 34942 GGTCTTTCCCGTGA 34955 |||||| || |||| Sbjct 3058700 GGTCTTGCCGGTGA 3058687 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | |||||||| || || ||||| || || || | || | || Sbjct 3059615 AGAACCAAGTGCAATGTGCTCTCTTTTTGGATGTTGTAATCACTCAGTGTCCGGCCGTCT 3059556 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||| ||||||||||||| ||| || |||||| | || | ||||| ||||| Sbjct 3059555 TCCAACTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGATACCCTCTTTGTCT 3059496 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | ||||| || | ||||| ||| Sbjct 3059495 TGGATCTTCGACTTGACGTTGTCGATTGTGTCTGATGATTCGACTTCCAGCGTTATTGTC 3059436 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || || |||||||| ||||||||||| Sbjct 3059435 TTCCCAGTAAGCGTCTTTACGAAGATCTGCAT 3059404 >seq1 Length=10671843 Score = 100 bits (110), Expect = 2e-16 Identities = 135/186 (73%), Gaps = 8/186 (4%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| ||||| || || | || |||| |||| ||||| || || |||| Sbjct 8978239 CCTTCTGGATGTTGTAGTCGGAAAGTGTACGGCCATCCTCCAACTGCTTGCCCGCAAAGA 8978298 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 ||| ||| |||||||| | || | || |||||||| | ||||| |||||| || Sbjct 8978299 TCAATCGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATTTTGGATTTGAC--AT- 8978355 Query 34908 CTATCGATTCATTGGCC----TCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | |||||| | || ||||| || | ||| |||||||| |||||||||||||| Sbjct 8978356 -TGTCGATTGTGTCGCTCGATTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTG 8978414 Query 34964 ACAAAG 34969 || ||| Sbjct 8978415 ACGAAG 8978420 >seq6 Length=2243500 Score = 91.5 bits (100), Expect = 1e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | ||| ||| ||||| ||||| ||||| || ||| |||| |||| Sbjct 1182121 CAGCACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATC 1182180 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || |||||||| || ||||||||||| || || ||||| | || | || |||||||| Sbjct 1182181 TTCGAGTTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCGGGTGGGATACCTTCCTTGTC 1182240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692772214333