Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq2 104 2e-17
seq6 84.2 2e-11
>seq2
Length=7009248
Score = 104 bits (114), Expect = 2e-17
Identities = 147/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
||||| | | ||| || ||||| ||||| ||||| || || |||||||| || ||||
Sbjct 3058891 CCTCCGCGGAGACGTAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGAT 3058832
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| || || || ||||| || |||||||| | ||||| | ||||||||||| |||
Sbjct 3058831 AGAGTACGGCCGTCTTCGAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGATCCGGGGGA 3058772
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738
|| || || ||||| || ||| || | |||||| | || | ||||| ||| || ||
Sbjct 3058771 ATGCCTTCCTTGTCCTG-AATCTTGGACTTGACATTATCGATGGTGTCCGAAGACTCCAC 3058713
Query 29739 TTCAAGAGTTATAGTTTTGCCAGT 29762
||||| || || || ||||| ||
Sbjct 3058712 CTCAAGGGTGATGGTCTTGCCGGT 3058689
Score = 98.7 bits (108), Expect = 8e-16
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634
||||||||||| || ||| || || || ||||| ||||||| | || || |||
Sbjct 3059843 AGCACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAATCCGACAACGTTCGGCCATCC 3059784
Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694
|| || || || |||||| | ||||| | ||||| |||||||| ||||||||||||||
Sbjct 3059783 TCCAGCTGCTTCCCAGCAAAAATCAAACGCTGCTGGTCCGGCGGGATACCCTCTTTGTCC 3059724
Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754
|| | || || || | || | ||||| ||| || ||||| | || || ||
Sbjct 3059723 TGGATCTTGCTCTTAACGTTGTCAATCGTGTCGGAACTCTCAACTTCCAAGGTGATCGTC 3059664
Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || || | || || ||||| ||||||||
Sbjct 3059663 TTTCCGGTAAGCGTCTTGACAAAGATCTGCAT 3059632
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGC 29618
|| || | || ||| || ||||| || | ||| |||||||| ||||| ||||| | |
Sbjct 3059630 CCACCGCGCAGACGAAGAACCAAGTGCAATGTGCTCTCTTTTTGGATGTTGTAATCACTC 3059571
Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678
| || | || || || | || ||||| || | ||||||| || || || || ||
Sbjct 3059570 AGTG-TCCGGCCGTCTTCCAACTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGTGG 3059512
Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738
||||||||||||||||| | || ||||| | || | ||||| || ||| ||
Sbjct 3059511 GATACCCTCTTTGTCTTGGATCTTCGACTTGACGTTGTCGATTGTGTCTGATGATTCGAC 3059452
Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787
||| || ||||| || || ||||| | || || || || |||||||||
Sbjct 3059451 TTCCAGCGTTATTGTCTTCCCAGTAAGCGTCTTTACGAAGATCTGCATT 3059403
Score = 84.2 bits (92), Expect = 2e-11
Identities = 142/206 (69%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| || || | ||||| |||||||| ||||||||||| || || | | || ||
Sbjct 3059163 ACGAAGGACGAGGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCAGACAGAGTACGTCC 3059104
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| || || || ||||| ||| | ||||| | |||||||| || ||||| ||||| ||
Sbjct 3059103 ATCCTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGATCTGGAGGAATGCCCTCCTT 3059044
Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
||| || | || |||||| | || | || || || ||| || || | || ||
Sbjct 3059043 GTCCTGGATCTTAGCCTTGACATTGTCGATGGTATCCGAGGATTCCACCTCCAAGGTGAT 3058984
Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAA 29776
|| || ||||| | || || ||||
Sbjct 3058983 GGTCTTTCCAGTGAGCGTCTTCACAA 3058958
>seq6
Length=2243500
Score = 84.2 bits (92), Expect = 2e-11
Identities = 100/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618
||| || | || ||||||||||| || || ||||| ||||| || ||||| || || |
Sbjct 1182106 TCCACCACGCAGACGCAGCACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGA 1182165
Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678
| |||||| ||| |||||||| |||||||| | |||| | || || || || ||
Sbjct 1182166 GAGGGTGCGGCCATCTTCGAGTTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCGGGTGG 1182225
Query 29679 AATACCCTCTTTGTCT 29694
||||| || ||||||
Sbjct 1182226 GATACCTTCCTTGTCT 1182241
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385219167135987
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |