Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq7 87.8 1e-11 seq1 86.0 5e-11 >seq7 Length=1695519 Score = 87.8 bits (96), Expect = 1e-11 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 432287 AGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACG 432346 ||| ||||| |||||| | | || || |||||||| ||||| |||||| | || || || Sbjct 281399 AGGCAAAGAGGGTCGTCTCCGTGGGAACTTGATGGGCAAGCGGGTCGATTTCTCAGCCCG 281340 Query 432347 TACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCC 432397 |||||| || ||| ||| || ||| || | ||| | |||||||||||||| Sbjct 281339 TACAGTCATCACTGGTGACCCGAATCTTTCACTCGACGAAGTTGGTGTTCC 281289 >seq1 Length=10671843 Score = 86.0 bits (94), Expect = 5e-11 Identities = 193/290 (67%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 282182 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 282241 || || || || || || || ||||| ||||| | || | || | || | | || Sbjct 5944984 ACCAGGCGGTTGTCGAAGTCCTCACCGCCCAAATGCGTGTCACCGGCAGTCGACTTGACC 5945043 Query 282242 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCA 282301 | ||||| || || || | | ||| || | ||||| |||||||||||||| || Sbjct 5945044 TCGAAAATACCCTCCTCGATGGTCAAGAGTGAGACATCGAAGGTTCCACCACCCAAGTCG 5945103 Query 282302 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 282361 || || || ||||| || || || || |||||||| || |||| |||||| Sbjct 5945104 AATATGAGAACATTGCGCTCGCCCTCAGTTTTCTTGTCAAGACCGTAGGCAATAGCAGCG 5945163 Query 282362 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 282421 || || || || || ||||| | | || || |||||||| || || ||||| || Sbjct 5945164 GCGGTGGGCTCGTTGATAATACGTAGGACGTTTAGACCAGCGATCAGACCAGCATCCTTT 5945223 Query 282422 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 || ||||| | || || ||||| || || || || ||||| | ||||| Sbjct 5945224 GTTGCTTGGCGCTGGGAGTCGTTGAAGTAGGCGGGGACAGTGACGACGGC 5945273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740630056329582