Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq7 87.8 1e-11
seq1 86.0 5e-11
>seq7
Length=1695519
Score = 87.8 bits (96), Expect = 1e-11
Identities = 86/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 432287 AGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACG 432346
||| ||||| |||||| | | || || |||||||| ||||| |||||| | || || ||
Sbjct 281399 AGGCAAAGAGGGTCGTCTCCGTGGGAACTTGATGGGCAAGCGGGTCGATTTCTCAGCCCG 281340
Query 432347 TACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCC 432397
|||||| || ||| ||| || ||| || | ||| | ||||||||||||||
Sbjct 281339 TACAGTCATCACTGGTGACCCGAATCTTTCACTCGACGAAGTTGGTGTTCC 281289
>seq1
Length=10671843
Score = 86.0 bits (94), Expect = 5e-11
Identities = 193/290 (67%), Gaps = 0/290 (0%)
Strand=Plus/Plus
Query 282182 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 282241
|| || || || || || || ||||| ||||| | || | || | || | | ||
Sbjct 5944984 ACCAGGCGGTTGTCGAAGTCCTCACCGCCCAAATGCGTGTCACCGGCAGTCGACTTGACC 5945043
Query 282242 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCA 282301
| ||||| || || || | | ||| || | ||||| |||||||||||||| ||
Sbjct 5945044 TCGAAAATACCCTCCTCGATGGTCAAGAGTGAGACATCGAAGGTTCCACCACCCAAGTCG 5945103
Query 282302 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 282361
|| || || ||||| || || || || |||||||| || |||| ||||||
Sbjct 5945104 AATATGAGAACATTGCGCTCGCCCTCAGTTTTCTTGTCAAGACCGTAGGCAATAGCAGCG 5945163
Query 282362 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 282421
|| || || || || ||||| | | || || |||||||| || || ||||| ||
Sbjct 5945164 GCGGTGGGCTCGTTGATAATACGTAGGACGTTTAGACCAGCGATCAGACCAGCATCCTTT 5945223
Query 282422 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471
|| ||||| | || || ||||| || || || || ||||| | |||||
Sbjct 5945224 GTTGCTTGGCGCTGGGAGTCGTTGAAGTAGGCGGGGACAGTGACGACGGC 5945273
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740630056329582
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |