Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq2 100 3e-16 seq6 89.7 5e-13 seq3 84.2 2e-11 seq1 84.2 2e-11 >seq2 Length=7009248 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||||||||| || ||||||||| | || | ||||| ||||||||||| Sbjct 3059373 GGTTGACTCTTTCTGAATGTTGTAATCGGAAAGTGTCCTCCCATCCTCCAGCTGCTTGCC 3059314 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||| ||||| || || || ||||||||||| || || ||||| ||| Sbjct 3059313 GGCAAATATGAGACGCTGTTGATCCGGTGGGATGCCTTCTTTATCCTGTATCTTCGACTT 3059254 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||||| | | ||| || |||| ||| | || ||||| ||||| || Sbjct 3059253 CACATTGTCGATGGTGTCTGACGACTCAACTTCGAGGGTAATAGTCTTGCCAGTCAGTGT 3059194 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 3059193 CTTGACGAAGATCTGCAT 3059176 Score = 100 bits (110), Expect = 3e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | |||| ||| ||||| || |||||||| || ||| | | | ||||| || Sbjct 3059837 AAATGCAGGGTGCTCTCCTTCTGGATGTTGTAATCCGACAACGTTCGGCCA-TCCTCCAG 3059779 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || || |||| | ||||||||||| || ||||| || || ||||| ||| Sbjct 3059778 CTGCTTCCCAGCAAAAATCAAACGCTGCTGGTCCGGCGGGATACCCTCTTTGTCCTGGAT 3059719 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | |||| |||||||| ||| || || | ||||| || || || Sbjct 3059718 CTTGCTCTTAACGTTGTCAATCGTGTCGGAACTCTCAACTTCCAAGGTGATCGTCTTTCC 3059659 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || || || || |||||||| Sbjct 3059658 GGTAAGCGTCTTGACAAAGATCTGCAT 3059632 Score = 98.7 bits (108), Expect = 1e-15 Identities = 128/175 (73%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 |||||||| ||||| || ||||| || | || | | ||| ||| ||||||||||||| Sbjct 3058861 GTGGACTCCTTCTGAATGTTGTAGTC--CGATAGAGTACGGCCGTCTTCGAGCTGCTTGC 3058804 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || | |||||||| || || || |||||||||||||| ||||| || Sbjct 3058803 CAGCGAAGATCAAGCGCTGCTGATCCGGGGGAATGCCTTCCTTGTCCTGAATCTTGGACT 3058744 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||| | || | ||||| | | |||||| || | ||||| ||| |||||||| Sbjct 3058743 TGACATTATCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGTCTTGCCGGT 3058689 >seq6 Length=2243500 Score = 89.7 bits (98), Expect = 5e-13 Identities = 88/111 (79%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| || ||||| ||| | ||| | | | || ||||| |||||||| Sbjct 1182137 GTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA-TCTTCGAGTTGCTTGCC 1182195 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| | || || ||||| |||||||| ||||| ||||||||||| ||||| Sbjct 1182196 AGCGAAGATCAGGCGCTGTTGGTCGGGTGGGATACCTTCCTTGTCTGTGAT 1182246 >seq3 Length=5817774 Score = 84.2 bits (92), Expect = 2e-11 Identities = 119/165 (72%), Gaps = 8/165 (5%) Strand=Plus/Plus Query 148827 GAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCAC 148886 || || | |||||| || || |||||| || || | ||||| || || |||| ||| Sbjct 3751222 GAAGCCAAATTGCAAACTGCTACCTCATCTGGTGCAGTATACTCGACAATTTCGGTGCAG 3751281 Query 148887 AGATT---GCTGC-ATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGC 148942 ||||| ||||| | ||| ||| | |||||||| |||||||||| ||| ||||| Sbjct 3751282 AGATTCGAGCTGCGAATTGT----GCCGAGATTCTTTTGGTTGCTCTTGCGGTTACACGC 3751337 Query 148943 GTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTC 148987 ||| |||||||||||| | || ||| || ||| ||| | ||| Sbjct 3751338 GTCTTTGTACAGCATGAAGGGGTTGCCGGTCTCCGTCTGGGCTTC 3751382 >seq1 Length=10671843 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| | |||||||||||| | || | ||||||||||| || ||||||||||||||| Sbjct 8978274 TCCTCCAACTGCTTGCCCGCAAAGATCAATCGCTGCTGGTCCGGTGGGATGCCTTCCTTG 8978333 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||| || |||| | || | |||||| | | || || |||| ||||| | Sbjct 8978334 TCCTGGATTTTGGATTTGACATTGTCGATTGTGTCGCTCGATTCGACCTCGAGGGTGATG 8978393 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAA 133651 || || || || || || || ||||| Sbjct 8978394 GTCTTACCCGTGAGGGTCTTGACGAA 8978419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420757700680