Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1 111 4e-19 >seq1 Length=10671843 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 131801 AAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCTACAAGA 131860 |||||||| || |||||||| |||||||| |||||| | | ||| ||| || | | Sbjct 3823053 AAGAAAGCCGACTGGGCTATCAAATGGATCCAAGATAAGAACTCTACCTTTGCTCAACGC 3823112 Query 131861 CTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTT 131920 ||||| || || ||| |||||| ||||| |||||| ||| ||||| | | ||||| Sbjct 3823113 CTTGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTTAGCGGTTCTTTCGCTTCCATCTTC 3823172 Query 131921 TGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGA 131980 |||||||||||||| || | ||||| || || | || || || || | ||||| | Sbjct 3823173 TGGCTTAAGAAGCGCGGTCTTATGCCGGGTCTGACCTTCTCAAACGAACTTATCTCTCGC 3823232 Query 131981 GATGAAGCATTGCATACTGAATTTGC 132006 || || | | |||||||| || || Sbjct 3823233 GACGAGGGTCTTCATACTGACTTCGC 3823258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186812693557727