Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq2 122 6e-23 >seq2 Length=7009248 Score = 122 bits (134), Expect = 6e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | ||||| || | |||||||||||||| ||||||||||| Sbjct 3059631 ACCACCGCGCAGACGAAGAACCAAGTGCAATGTGCTCTCTTTTTGGATGTTGTAATCACT 3059572 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||| || |||| ||||| || || ||||| || ||||| ||||| || ||| | || Sbjct 3059571 CAGTGTCCGGCCGTCTTCCAACTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGTGG 3059512 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||| |||||||| || ||| | | || | ||| | ||||| |||||| | Sbjct 3059511 GATACCCTCTTTGTCTTGGATCTTC-GACTTGACGTTGTCGATTGTGTCTGATGATTCGA 3059453 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||| || || || || || | ||| ||||| ||||||||||| Sbjct 3059452 CTTCCAGCGTTATTGTCTTCCCAGTAAGCGTCTTTACGAAGATCTGCAT 3059404 Score = 118 bits (130), Expect = 7e-22 Identities = 156/213 (73%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||||||| || |||||||| || || ||||||||||| || | || || | || || Sbjct 3059841 CACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAATCCGACAACGTTCGGCCATCCTC 3059782 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGT-CGG 33658 || || || || |||||||||||||||||||| || |||| | ||| ||||||| | | Sbjct 3059781 CAGCTGCTTCCCAGCAAAAATCAAACGCTGCTGGTCCGGCGGGATACCCTCTTTGTCCTG 3059722 Query 33659 CAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTT 33717 | || || || ||| | ||| | |||||| || || || | |||||||| Sbjct 3059721 GATCTTGCTCTT--AACGTTGTCAATCGTGTCGGAACTCTCAACTTCCAAGGTGATCGTC 3059664 Query 33718 TTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || || | ||| || ||||||||||||||| Sbjct 3059663 TTTCCGGTAAGCGTCTTGACAAAGATCTGCATA 3059631 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 |||||| || |||||||||||||| ||||| | | || |||| || || |||||||| Sbjct 3059367 CTCTTTCTGAATGTTGTAATCGGAAAGTGTCCTCCCATCCTCCAGCTGCTTGCCGGCAAA 3059308 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | |||||| ||||| | || | |||||||| || || ||| ||| |||| Sbjct 3059307 TATGAGACGCTGTTGATCCGGTGGGATGCCTTCTTTATCCTGTATCTTCGACTTC-ACAT 3059249 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | |||||| || || || || | || || || || || || | || || | Sbjct 3059248 TGTCGATGGTGTCTGACGACTCAACTTCGAGGGTAATAGTCTTGCCAGTCAGTGTCTTGA 3059189 Query 33737 CAAAGATCTGCATA 33750 | |||||||||||| Sbjct 3059188 CGAAGATCTGCATA 3059175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328703971957440