Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq2 122 6e-23
>seq2
Length=7009248
Score = 122 bits (134), Expect = 6e-23
Identities = 166/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | || ||| | ||||| || | |||||||||||||| |||||||||||
Sbjct 3059631 ACCACCGCGCAGACGAAGAACCAAGTGCAATGTGCTCTCTTTTTGGATGTTGTAATCACT 3059572
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
||||| || |||| ||||| || || ||||| || ||||| ||||| || ||| | ||
Sbjct 3059571 CAGTGTCCGGCCGTCTTCCAACTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGTGG 3059512
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| ||| |||||||| || ||| | | || | ||| | ||||| |||||| |
Sbjct 3059511 GATACCCTCTTTGTCTTGGATCTTC-GACTTGACGTTGTCGATTGTGTCTGATGATTCGA 3059453
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || | ||| || || || || || | ||| ||||| |||||||||||
Sbjct 3059452 CTTCCAGCGTTATTGTCTTCCCAGTAAGCGTCTTTACGAAGATCTGCAT 3059404
Score = 118 bits (130), Expect = 7e-22
Identities = 156/213 (73%), Gaps = 4/213 (2%)
Strand=Plus/Minus
Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599
||||||||| || |||||||| || || ||||||||||| || | || || | || ||
Sbjct 3059841 CACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAATCCGACAACGTTCGGCCATCCTC 3059782
Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGT-CGG 33658
|| || || || |||||||||||||||||||| || |||| | ||| ||||||| | |
Sbjct 3059781 CAGCTGCTTCCCAGCAAAAATCAAACGCTGCTGGTCCGGCGGGATACCCTCTTTGTCCTG 3059722
Query 33659 CAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTT 33717
| || || || ||| | ||| | |||||| || || || | ||||||||
Sbjct 3059721 GATCTTGCTCTT--AACGTTGTCAATCGTGTCGGAACTCTCAACTTCCAAGGTGATCGTC 3059664
Query 33718 TTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
|| || || | ||| || |||||||||||||||
Sbjct 3059663 TTTCCGGTAAGCGTCTTGACAAAGATCTGCATA 3059631
Score = 86.0 bits (94), Expect = 4e-12
Identities = 137/194 (71%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617
|||||| || |||||||||||||| ||||| | | || |||| || || ||||||||
Sbjct 3059367 CTCTTTCTGAATGTTGTAATCGGAAAGTGTCCTCCCATCCTCCAGCTGCTTGCCGGCAAA 3059308
Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677
|| | |||||| ||||| | || | |||||||| || || ||| ||| ||||
Sbjct 3059307 TATGAGACGCTGTTGATCCGGTGGGATGCCTTCTTTATCCTGTATCTTCGACTTC-ACAT 3059249
Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736
||| | |||||| || || || || | || || || || || || | || || |
Sbjct 3059248 TGTCGATGGTGTCTGACGACTCAACTTCGAGGGTAATAGTCTTGCCAGTCAGTGTCTTGA 3059189
Query 33737 CAAAGATCTGCATA 33750
| ||||||||||||
Sbjct 3059188 CGAAGATCTGCATA 3059175
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328703971957440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |