Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq2 95.1 3e-14
>seq2
Length=7009248
Score = 95.1 bits (104), Expect = 3e-14
Identities = 127/177 (72%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| ||||| || || || || || || ||||||| ||| || |||||| ||||
Sbjct 3059419 AAGACGCTTACTGGGAAGACAATAACGCTGGAAGTCGAATCATCAGACACAATCGACAAC 3059478
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| ||||| ||||| ||||| || || || ||| || || | ||||||
Sbjct 3059479 GTCAAGTCGAAGATCCAAGACAAAGAGGGTATCCCACCAGACCAACAGCGATTGATCTTC 3059538
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAG 206361
||||| |||||||||||||| || |||| || ||||||||| |||| ||||||
Sbjct 3059539 GCCGGCAAGCAGTTGGAAGACGGCCGGACACTGAGTGATTACAACATCCAAAAAGAG 3059595
Score = 93.3 bits (102), Expect = 1e-13
Identities = 144/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| || ||| || || || || || || || || | ||||| || || |||
Sbjct 3059179 CAGATCTTCGTCAAGACACTGACTGGCAAGACTATTACCCTCGAAGTTGAGTCGTCAGAC 3059238
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| |||| || ||| ||||| || || |||||||| || ||||| ||
Sbjct 3059239 ACCATCGACAATGTGAAGTCGAAGATACAGGATAAAGAAGGCATCCCACCGGATCAACAG 3059298
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| || || || ||||| |||||| |||| ||||| ||||| | ||||||||||| |
Sbjct 3059299 CGTCTCATATTTGCCGGCAAGCAGCTGGAGGATGGGAGGACACTTTCCGATTACAACATT 3059358
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378
||||||||||| || || ||||||||
Sbjct 3059359 CAGAAAGAGTCAACCCTCCACCTTGT 3059384
Score = 89.7 bits (98), Expect = 1e-12
Identities = 136/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| |||||||| ||||| || ||||| ||||| |||||| || || || ||||
Sbjct 3058963 AAGACGCTCACTGGAAAGACCATCACCTTGGAGGTGGAATCCTCGGATACCATCGACAAT 3059022
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| ||||| || || || || || ||| || || || | | |||||
Sbjct 3059023 GTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCTCCAGATCAGCAGCGCTTGATCTTT 3059082
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
||||| |||||| | || |||||| | ||| || | || |||||| | || || || ||
Sbjct 3059083 GCCGGCAAGCAGCTTGAGGATGGACGTACTCTGTCTGACTACAACATTCAAAAGGAATCC 3059142
Query 206365 ACTCTTCACCTTGT 206378
||||||||||| ||
Sbjct 3059143 ACTCTTCACCTCGT 3059156
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181820694005447
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |