Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq2 95.1 3e-14 >seq2 Length=7009248 Score = 95.1 bits (104), Expect = 3e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||||| || || || || || || ||||||| ||| || |||||| |||| Sbjct 3059419 AAGACGCTTACTGGGAAGACAATAACGCTGGAAGTCGAATCATCAGACACAATCGACAAC 3059478 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| ||||| || || || ||| || || | |||||| Sbjct 3059479 GTCAAGTCGAAGATCCAAGACAAAGAGGGTATCCCACCAGACCAACAGCGATTGATCTTC 3059538 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAG 206361 ||||| |||||||||||||| || |||| || ||||||||| |||| |||||| Sbjct 3059539 GCCGGCAAGCAGTTGGAAGACGGCCGGACACTGAGTGATTACAACATCCAAAAAGAG 3059595 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || || || || || || || | ||||| || || ||| Sbjct 3059179 CAGATCTTCGTCAAGACACTGACTGGCAAGACTATTACCCTCGAAGTTGAGTCGTCAGAC 3059238 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || |||||||| || ||||| || Sbjct 3059239 ACCATCGACAATGTGAAGTCGAAGATACAGGATAAAGAAGGCATCCCACCGGATCAACAG 3059298 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || || ||||| |||||| |||| ||||| ||||| | ||||||||||| | Sbjct 3059299 CGTCTCATATTTGCCGGCAAGCAGCTGGAGGATGGGAGGACACTTTCCGATTACAACATT 3059358 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||||| || || |||||||| Sbjct 3059359 CAGAAAGAGTCAACCCTCCACCTTGT 3059384 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || |||||||| ||||| || ||||| ||||| |||||| || || || |||| Sbjct 3058963 AAGACGCTCACTGGAAAGACCATCACCTTGGAGGTGGAATCCTCGGATACCATCGACAAT 3059022 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || ||| || || || | | ||||| Sbjct 3059023 GTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCTCCAGATCAGCAGCGCTTGATCTTT 3059082 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | || |||||| | ||| || | || |||||| | || || || || Sbjct 3059083 GCCGGCAAGCAGCTTGAGGATGGACGTACTCTGTCTGACTACAACATTCAAAAGGAATCC 3059142 Query 206365 ACTCTTCACCTTGT 206378 ||||||||||| || Sbjct 3059143 ACTCTTCACCTCGT 3059156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181820694005447