Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1 123 4e-22 seq3 96.9 5e-14 >seq1 Length=10671843 Score = 123 bits (136), Expect = 4e-22 Identities = 207/296 (70%), Gaps = 5/296 (2%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||||| || || || || |||||||| || ||| |||||| Sbjct 3822654 GATCTGGCAGATGTAC-AAGAAGGCTGAAGCATCATTCTGGACCGCGGAAGAGATCGACC 3822712 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTCG---CTGAGCGACGACGAGCGCCATTTCATCA 1455891 || || | | | ||| || | ||||||||| ||| | ||||| Sbjct 3822713 TCTCGAAAGATTTGCACGATTGGAACAACAGACTCAACGACGACGAACGCTACTTCATTT 3822772 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 |||||||||||||||||| || || ||||| ||||| ||||||||| | | Sbjct 3822773 CCCACGTCCTCGCCTTTTTT-GCTGCATCAGATGGTATCGTCAACGAGAACCTAGTTGAG 3822831 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| | || || ||| | || |||||||| | || ||||| ||||||||| Sbjct 3822832 CGCTTCAGTGGCGAAGTTCAAATACCTGAGGCACGATGCTTCTACGGTTTCCAGATCATG 3822891 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 || || ||||||||||| || || ||||| || || |||||||| || ||||||| Sbjct 3822892 ATGGAGAACATCCACTCCGAGACTTACTCCCTTCTCATCGACACATATATCAAGGA 3822947 >seq3 Length=5817774 Score = 96.9 bits (106), Expect = 5e-14 Identities = 101/129 (78%), Gaps = 4/129 (3%) Strand=Plus/Plus Query 165739 CCCCCTATT--TGGCAGACCTGGTCA-CGTGGGGCGCCGTCGGTGCGCGCACCACCGAGA 165795 ||||| ||| | || || ||| ||| |||||| |||||| |||||||||||||| |||| Sbjct 4080080 CCCCCAATTCCTCGCCGATCTGCTCAGCGTGGG-CGCCGTGGGTGCGCGCACCACGGAGA 4080138 Query 165796 GCCAGGTGCACCGCGAGATGGCGTCGGCGCTGCCGCTGCCCATTGGCTTCAAAAACAGCA 165855 | || ||||||||||| ||||||| | || | | ||| |||||||||| || ||| Sbjct 4080139 GTCAATTGCACCGCGAGTTGGCGTCTGGACTCTCCTTCCCCGTTGGCTTCAAGAATGGCA 4080198 Query 165856 CCGACGGCA 165864 | ||||||| Sbjct 4080199 CAGACGGCA 4080207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177810524837134