Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq2 140 3e-28
seq1 105 6e-18
>seq2
Length=7009248
Score = 140 bits (154), Expect = 3e-28
Identities = 172/231 (74%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|| ||||| | ||| | ||||||||| | || |||||||| || ||||||||||| | |
Sbjct 3059858 CCGCCACGAAGCCTAAGCACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAATCCGAC 3059799
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
|| ||||| | || ||||||||||| || ||||| ||||| ||||||||||||| ||
Sbjct 3059798 AACGTTCGGCCATCCTCCAGCTGCTTCCCAGCAAAAATCAAACGCTGCTGGTCCGGCGGG 3059739
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCG---CTCGATTC 35685
| | ||| |||||| |||||| ||| | |||| | | ||||||| ||| ||
Sbjct 3059738 ATACCCTCTTTGTCCTGGATCTTGCTCTT-AACGTTGTCAATCGTGTCGGAACTC---TC 3059683
Query 35686 CACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| |||| |||||||| || || || | || || ||||| ||||||||
Sbjct 3059682 AACTTCCAAGGTGATCGTCTTTCCGGTAAGCGTCTTGACAAAGATCTGCAT 3059632
Score = 111 bits (122), Expect = 1e-19
Identities = 133/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
||||||||||||||||| || | || || || | || || |||||||| || |||||
Sbjct 3059138 TCCTTTTGAATGTTGTAGTCAGACAGAGTACGTCCATCCTCAAGCTGCTTGCCGGCAAAG 3059079
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665
||||| |||||||| || | ||||| || |||||||||| |||||| ||| | | |
Sbjct 3059078 ATCAAGCGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTG 3059019
Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725
| | || || ||||||||||||| ||||| || || || || | || ||||||
Sbjct 3059018 TCGATGGTATCCGAGGATTCCACCTCCAAGGTGATGGTCTTTCCAGTGAGCGTCTTCACA 3058959
Query 35726 A 35726
|
Sbjct 3058958 A 3058958
Score = 96.9 bits (106), Expect = 3e-15
Identities = 150/212 (71%), Gaps = 2/212 (1%)
Strand=Plus/Minus
Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587
||||| || || || ||||| ||||| ||||||||||| || || || |||| |||
Sbjct 3059612 ACCAAGTGCAATGTGCTCTCTTTTTGGATGTTGTAATCACTCAGTGTCCGGCCGTCTTCC 3059553
Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647
| |||||| || || || ||||| ||||| ||||| | || | | ||| ||||| |
Sbjct 3059552 AACTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGATACCCTCTTTGTCTTGG 3059493
Query 35648 ATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706
||||| ||| | |||| | | ||||| ||||| || |||| ||| || || ||
Sbjct 3059492 ATCTTCGACTTGA-CGTTGTCGATTGTGTCTGATGATTCGACTTCCAGCGTTATTGTCTT 3059434
Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738
|| || | || || || || ||||||||||
Sbjct 3059433 CCCAGTAAGCGTCTTTACGAAGATCTGCATTC 3059402
Score = 82.4 bits (90), Expect = 7e-11
Identities = 119/168 (71%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| ||||||||||| || | | || || |||| || |||||||| || || ||
Sbjct 3058856 CTCCTTCTGAATGTTGTAGTCCGATAGAGTACGGCCGTCTTCGAGCTGCTTGCCAGCGAA 3058797
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
||||| |||||||| |||| |||| || ||||||||| ||||| ||| | | |
Sbjct 3058796 GATCAAGCGCTGCTGATCCGGGGGAATGCCTTCCTTGTCCTGAATCTTGGACTTGACATT 3058737
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712
| | ||||| || |||||||| | ||||| || || || ||
Sbjct 3058736 ATCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGTCTTGCCGGT 3058689
>seq1
Length=10671843
Score = 105 bits (116), Expect = 6e-18
Identities = 123/166 (74%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606
|||| || |||||||| |||| | || || | || |||| |||||| |||||||| |
Sbjct 8978239 CCTTCTGGATGTTGTAGTCGGAAAGTGTACGGCCATCCTCCAACTGCTTGCCCGCAAAGA 8978298
Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666
|||| ||||||||||||| || | || ||||||||| ||| || || | | |
Sbjct 8978299 TCAATCGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATTTTGGATTTGACATTGT 8978358
Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712
| | |||||||||||||| ||||| | ||||| || ||||||||
Sbjct 8978359 CGATTGTGTCGCTCGATTCGACCTCGAGGGTGATGGTCTTACCCGT 8978404
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450793560555560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |