Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq2 114 1e-20
seq1 111 2e-19
seq3 87.8 2e-12
>seq2
Length=7009248
Score = 114 bits (126), Expect = 1e-20
Identities = 147/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
||||| | ||| || | || | ||| || ||||| ||||| ||||||||||||||
Sbjct 3058891 CCTCCGCGGAGACGTAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGAT 3058832
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| || | ||| |||||||| ||||| || || ||||| ||||||||||| || ||
Sbjct 3058831 AGAGTACGGCCGTCTTCGAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGATCCGGGGGA 3058772
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|||||||| || || ||||| || ||||| || | ||||| || || |||||
Sbjct 3058771 ATGCCTTCCTTGTCCTGAATCTTGGACTTGACATTATCGATGGTGTCCGAAGACTCCACC 3058712
Query 134667 TCGAGAGTAATGGTTTTACCGGT 134689
|| || || ||||| || |||||
Sbjct 3058711 TCAAGGGTGATGGTCTTGCCGGT 3058689
Score = 109 bits (120), Expect = 6e-19
Identities = 146/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| || | ||| || | |||||||| || ||||||||||||||||||||||||||
Sbjct 3059174 CCGCCACGGAGACGAAGGACGAGGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCAGAC 3059115
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| || | || || ||||| ||||| ||||| ||||| ||||||||||| || ||
Sbjct 3059114 AGAGTACGTCCATCCTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGATCTGGAGGA 3059055
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
||||| || || || || || || ||||| ||| | || || || ||||||||
Sbjct 3059054 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATGGTATCCGAGGATTCCACC 3058995
Query 134667 TCGAGAGTAATGGTTTTACCGGT 134689
|| | || ||||| || || ||
Sbjct 3058994 TCCAAGGTGATGGTCTTTCCAGT 3058972
Score = 102 bits (112), Expect = 8e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564
|| ||||| || || || || || ||||||||||| ||| || || || ||
Sbjct 3059384 ACAAGGTGGAGGGTTGACTCTTTCTGAATGTTGTAATCGGAAAGTGTCCTCCCATCCTCC 3059325
Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624
||||| ||||| ||||| || | |||||| ||||| || || ||||||||||| || ||
Sbjct 3059324 AGCTGCTTGCCGGCAAATATGAGACGCTGTTGATCCGGTGGGATGCCTTCTTTATCCTGT 3059265
Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684
|| || || || ||| | ||||| ||||| || || ||||| ||||| || ||
Sbjct 3059264 ATCTTCGACTTCACATTGTCGATGGTGTCTGACGACTCAACTTCGAGGGTAATAGTCTTG 3059205
Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| || | || || ||||| || |||||
Sbjct 3059204 CCAGTCAGTGTCTTGACGAAGATCTGCAT 3059176
Score = 82.4 bits (90), Expect = 8e-11
Identities = 135/192 (70%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 134523 TCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAA 134581
||||| || |||||||| || | ||||| | | | || || ||||| || || |||||
Sbjct 3059822 TCCTTCTGGATGTTGTAATCCGACAACGTTCGGCCA-TCCTCCAGCTGCTTCCCAGCAAA 3059764
Query 134582 AATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGC 134641
||||||||||||||| || ||||| || || ||||| || || || || || ||
Sbjct 3059763 AATCAAACGCTGCTGGTCCGGCGGGATACCCTCTTTGTCCTGGATCTTGCTCTTAACGTT 3059704
Query 134642 GTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAAC 134701
||| | |||||||| || || || | || || || || ||||| | || || ||
Sbjct 3059703 GTCAATCGTGTCGGAACTCTCAACTTCCAAGGTGATCGTCTTTCCGGTAAGCGTCTTGAC 3059644
Query 134702 GAAAATTTGCAT 134713
|| || |||||
Sbjct 3059643 AAAGATCTGCAT 3059632
>seq1
Length=10671843
Score = 111 bits (122), Expect = 2e-19
Identities = 133/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583
|||| || |||||||||||| || || | || || | ||| ||||| ||||| |
Sbjct 8978239 CCTTCTGGATGTTGTAGTCGGAAAGTGTACGGCCATCCTCCAACTGCTTGCCCGCAAAGA 8978298
Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643
|||| |||||||| || || || |||||||| || || || ||||| |||||| ||
Sbjct 8978299 TCAATCGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATTTTGGATTTGACATTGT 8978358
Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703
| | ||||||| |||||| || ||||| || ||||| ||||| || | || || ||||
Sbjct 8978359 CGATTGTGTCGCTCGATTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGA 8978418
Query 134704 A 134704
|
Sbjct 8978419 A 8978419
>seq3
Length=5817774
Score = 87.8 bits (96), Expect = 2e-12
Identities = 120/168 (71%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 8236 ATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAAC 8295
||| ||||| || | || ||||| | || | |||||||||||||||||| || |||
Sbjct 3751388 ATTCTCGAAGCCCAGACGGAGACCGGCAACCCCTTCATGCTGTACAAAGACGCGTGTAAC 3751329
Query 8296 GCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATT 8355
||| ||||| |||| || | ||||| ||| | || ||||| ||| | ||||||
Sbjct 3751328 CGCAAGAGCAACCAAAAGAATCTCGGCACAATTCGCAGCTCGAATCTCTGCACCGAAATT 3751269
Query 8356 GTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCG 8403
|| |||| | || || || || || || ||||||||| | || |||
Sbjct 3751268 GTCGAGTATACTGCACCAGATGAGGTAGCAGTTTGCAATTTGGCTTCG 3751221
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505398355777640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |