Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1 150 2e-31 >seq1 Length=10671843 Score = 150 bits (166), Expect = 2e-31 Identities = 310/457 (68%), Gaps = 8/457 (2%) Strand=Plus/Minus Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372 |||||| || || ||||| |||||||| || |||||||| || || || ||||| | Sbjct 3823565 CATAACACCGGCCTTCTGGTAGTCACCAACCCGCTTCTCGAAGAAGTTGGTCTTGCCGGC 3823506 Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCC 39432 ||||||||| |||||||| || || ||||| || || || || | || | || Sbjct 3823505 CAATGATATCGACTCCATGAAGTCGAATGGATTTGTCGCGTTGTAGTACTTCTGGTTACC 3823446 Query 39433 TAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATT 39492 | || | | | |||||| || ||||| |||||| ||||||| | || Sbjct 3823445 GAGAGCTAGGAGTAGACGATCTGCCACGAATTCGATGTATTGCTTCATCAGACCCGCGTT 3823386 Query 39493 CATTCCTAT--GAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACG 39550 ||| |||| ||| || ||||||||||| || | ||||||| |||||| ||| Sbjct 3823385 CATACCTAACAGAGCGCAA--GGTAGAGCCTCTGTCAAGAACTCTTGCTCGATGGTGACG 3823328 Query 39551 GCCTCTGTTATTATCGATGTT--ACTACCTCATCACTCGGTGGATGCAATAAATGTTTAA 39608 ||||| || || | || || || ||| | || ||| | | | ||| | Sbjct 3823327 GCCTCAGTAATGAC--ATCTTGAACAGCCTGCTTGCTTGGTCGGTTGTTGAGATGAGAGA 3823270 Query 39609 ACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAA 39668 | | | ||||||||||||| ||| || ||||| || | | || | |||||| || | Sbjct 3823269 AGAGGAGGCAGGCGAAGTCAGTATGAAGACCCTCGTCGCGAGAGATAAGTTCGTTTGAGA 3823210 Query 39669 ATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAG 39728 | || || || ||||| ||||| ||||| || ||||| || |||| ||| ||||| || Sbjct 3823209 AGGTCAGACCCGGCATAAGACCGCGCTTCTTAAGCCAGAAGATGGAAGCGAAAGAACCGC 3823150 Query 39729 AAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAG 39765 ||||||||| || || || || || || |||||||| Sbjct 3823149 TAAAGAAGATACCCTCAACAGCAGCGAAGGCAACAAG 3823113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908739895480