Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq1 150 2e-31
>seq1
Length=10671843
Score = 150 bits (166), Expect = 2e-31
Identities = 310/457 (68%), Gaps = 8/457 (2%)
Strand=Plus/Minus
Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372
|||||| || || ||||| |||||||| || |||||||| || || || ||||| |
Sbjct 3823565 CATAACACCGGCCTTCTGGTAGTCACCAACCCGCTTCTCGAAGAAGTTGGTCTTGCCGGC 3823506
Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCC 39432
||||||||| |||||||| || || ||||| || || || || | || | ||
Sbjct 3823505 CAATGATATCGACTCCATGAAGTCGAATGGATTTGTCGCGTTGTAGTACTTCTGGTTACC 3823446
Query 39433 TAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATT 39492
| || | | | |||||| || ||||| |||||| ||||||| | ||
Sbjct 3823445 GAGAGCTAGGAGTAGACGATCTGCCACGAATTCGATGTATTGCTTCATCAGACCCGCGTT 3823386
Query 39493 CATTCCTAT--GAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACG 39550
||| |||| ||| || ||||||||||| || | ||||||| |||||| |||
Sbjct 3823385 CATACCTAACAGAGCGCAA--GGTAGAGCCTCTGTCAAGAACTCTTGCTCGATGGTGACG 3823328
Query 39551 GCCTCTGTTATTATCGATGTT--ACTACCTCATCACTCGGTGGATGCAATAAATGTTTAA 39608
||||| || || | || || || ||| | || ||| | | | ||| |
Sbjct 3823327 GCCTCAGTAATGAC--ATCTTGAACAGCCTGCTTGCTTGGTCGGTTGTTGAGATGAGAGA 3823270
Query 39609 ACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAA 39668
| | | ||||||||||||| ||| || ||||| || | | || | |||||| || |
Sbjct 3823269 AGAGGAGGCAGGCGAAGTCAGTATGAAGACCCTCGTCGCGAGAGATAAGTTCGTTTGAGA 3823210
Query 39669 ATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAG 39728
| || || || ||||| ||||| ||||| || ||||| || |||| ||| ||||| ||
Sbjct 3823209 AGGTCAGACCCGGCATAAGACCGCGCTTCTTAAGCCAGAAGATGGAAGCGAAAGAACCGC 3823150
Query 39729 AAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAG 39765
||||||||| || || || || || || ||||||||
Sbjct 3823149 TAAAGAAGATACCCTCAACAGCAGCGAAGGCAACAAG 3823113
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686908739895480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |