Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq1 107 6e-18 >seq1 Length=10671843 Score = 107 bits (118), Expect = 6e-18 Identities = 121/161 (75%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 443709 CGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCCAT 443768 || || || || || |||| || || || | || |||||||| |||| || ||||| Sbjct 3823110 CGCCTTGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTTAGCGGTT-CTTTCGCTTCCAT 3823168 Query 443769 CTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATCAG 443828 ||||||| | || ||||| || ||||||| ||||||||||| |||||||| ||| Sbjct 3823169 CTTCTGGCTTAAGAAGCGCGGTCTTATGCCGGGTCTGACCTTCTCAAACGAACTTATCTC 3823228 Query 443829 TCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCT 443869 ||| ||||||||| | ||| ||||||||||| || |||| Sbjct 3823229 TCGCGACGAGGGTCTTCATACTGACTTCGCCTGCCTCCTCT 3823269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588335857546115