Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq3 149 8e-31
seq1 102 1e-16
>seq3
Length=5817774
Score = 149 bits (164), Expect = 8e-31
Identities = 445/684 (65%), Gaps = 11/684 (2%)
Strand=Plus/Plus
Query 111473 TAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAG 111532
|||||||| |||||||| ||||| |||| | || || || || | | || ||
Sbjct 3751508 TAGAGGGCCTCAAACTCGTCACCGTATACGTCAGCCAGGCCCGGAGCTTCATTGGGGCAA 3751567
Query 111533 AAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGG 111592
|| || | ||||| || | ||| || ||||||||||| || ||||| |||| ||
Sbjct 3751568 AACAGCGTCCATTCGGCATTCTTCTCGACACGCTTCATGAAGAGATCTGGGGTCCAAAGA 3751627
Query 111593 GATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGG 111652
| | | ||||| || | || | || || | || || || || || || | |
Sbjct 3751628 GCTAAGAAGAGGTCACGGGCGCGGACTTCCTCCTTGCCGTGATTCTTGCGCAAGTCCAAG 3751687
Query 111653 AACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC 111712
||||| | || ||| |||||||| |||||||| ||||| |||| | || | | |||
Sbjct 3751688 AACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGACGGCGAACGCACC---TGGCCGC 3751744
Query 111713 ------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATA 111766
|| |||| | ||||| | || ||| || || ||||| ||||| || |
Sbjct 3751745 TTGTTACCTCCTTGGTCGACATATCTTGCGGTGTTATTGAAGACGCGGAGCATAGGCACG 3751804
Query 111767 ATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGG 111826
|| || | || |||||||| || ||| ||| ||||||| | | |||
Sbjct 3751805 ATCCCGTTGGAAGATCCATTTGTGCCGGCAATGTAAGAGCCGGTGGCTCTGATACGATGT 3751864
Query 111827 ATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCA 111886
| || || ||| || || || ||| ||| || || ||||| | | | || |
Sbjct 3751865 ACGTTCAGCCCGATGCCTCCCGCCGTCTTCGAAATCAAGGCACAGGTCTTCAAGGTATCG 3751924
Query 111887 TAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGT 111946
|| ||||| | || |||||| || || |||| ||||| ||| | ||||||||||
Sbjct 3751925 TAAATACCCTCAATGCTGTCCTCTTTCATGTCGATGAGGAAACAAGACGCCATCTGCGGT 3751984
Query 111947 CTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACAT 112005
|| ||||||||||||||||| ||||| | ||||| |||| ||| | ||||||||
Sbjct 3751985 TGCGGGGTACCAGCATTGAAGAGAGTTGGCGAGGCGTGTGTGAA-GTACTTCTGGGACAT 3752043
Query 112006 CTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCG 112065
|| || ||||| | ||| ||||| || || || ||||| | || || ||
Sbjct 3752044 GAGGTTATAGGTCTCGAGGACCTTCTCAATATCATCGCCCCAAATGCCAACAGCAACACG 3752103
Query 112066 CATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTT 112125
||| | ||||| || || | || || |||||| || || | ||||| |
Sbjct 3752104 CATTATCATGTGTTGAGGTCTCTCAGCGACCTTGCCATTAAGACGAAGTAGATAAGACCG 3752163
Query 112126 CTCAAGGGTTTTGAGACCAAAGTA 112149
||| ||||| |||| |||||||||
Sbjct 3752164 CTCGAGGGTCTTGAAACCAAAGTA 3752187
Score = 104 bits (114), Expect = 3e-17
Identities = 123/167 (74%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 111242 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAT 111301
|| |||||||||||||| || |||||| | || ||||| | |||||| || ||
Sbjct 3751222 GAAGCCAAATTGCAAACTGCTACCTCATCTGGTGCAGTATACTCGACAATTTCGGTGCAG 3751281
Query 111302 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCC 111361
| || || || ||| || || | |||||||||||| ||||| ||| ||||| ||
Sbjct 3751282 AGATTCGAGCTGCGAATTGTGCCGAGATTCTTTTGGTTGCTCTTGCGGTTACACGCGTCT 3751341
Query 111362 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAAT 111408
||||| |||||| |||| | || ||||||||||| | || ||||||
Sbjct 3751342 TTGTACAGCATGAAGGGGTTGCCGGTCTCCGTCTGGGCTTCGAGAAT 3751388
>seq1
Length=10671843
Score = 102 bits (112), Expect = 1e-16
Identities = 141/195 (72%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 122671 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCC 122730
|| |||||||| || || || |||||||| ||||||||| ||||| ||||| |||||
Sbjct 3823246 TGAAGACCCTCGTCGCGAGAGATAAGTTCGTTTGAGAAGGTCAGACCCGGCATAAGACCG 3823187
Query 122731 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 122790
|||||||| | ||| | || | ||| || ||| |||||||||||||| |||
Sbjct 3823186 CGCTTCTTAAGCCAGAAGATGGAAGCGAAAGAACCGCTAAAGAAGATACCCTCAACAGCA 3823127
Query 122791 GCAAACGCAAAAAGGCGTTCGGCGAAGG-AGCGAGACTTTGCATCAAACCATTTCATTGC 122849
|| || |||| |||||||| || |||| || | ||| | | | |||||| || ||
Sbjct 3823126 GCGAAGGCAACAAGGCGTTGAGCAAAGGTAGAG-TTCTTATCTTGGATCCATTTGATAGC 3823068
Query 122850 CCATTTCGCCTTCTT 122864
||| | || |||||
Sbjct 3823067 CCAGTCGGCTTTCTT 3823053
Score = 89.7 bits (98), Expect = 6e-13
Identities = 225/339 (66%), Gaps = 20/339 (6%)
Strand=Plus/Plus
Query 182520 CCCTTGATGTGAGAACCATCATTATCGGCATCTGTCATAATCATAAGACGACCATAGCGA 182579
|| ||||| || ||| |||| ||| ||| ||||| ||||| | | ||||||||
Sbjct 351298 CCTTTGATATGGCTACCGTCATGATCCTGATCCGTCATGATCATGATGTGTCCATAGCGG 351357
Query 182580 AG-----TTCAGAAACATCTTGGTAGTCTTTTCCTTGT--TGAAGACCAAGGATCTTCTT 182632
|| | ||| || ||||| || | ||||| | ||| || | || ||||||
Sbjct 351358 AGACTCTTGCAG-----TCCTGGTAATCCGT--CTTGTGCTTAAGCCCTATGAACTTCTT 351410
Query 182633 GAGATCATTGAACTCCTGGTTTGATGTAAGCTGTGCCACCGAAGCGTCCCGAACATTCTT 182692
|| | | | |||| ||| | | ||| | ||||| ||||| ||||||||
Sbjct 351411 GATGTTTTGTATCTCCGCGTTCTTCGAGATCTGGTCAACCGAGGCGTCTCGAACATTGAG 351470
Query 182693 ACATTTACCGCGAAGTGGGAACACACCGTAGTGATCACGACCAACGACAGAGAGACCCGC 182752
| ||||| ||||| ||||| ||||| || ||||| | |||||||||||| | || ||
Sbjct 351471 AAGCTTACCACGAAGGGGGAAAACACCAAAGAGATCAGGCCCAACGACAGAGCGCCCTGC 351530
Query 182753 AACCGCGAGGGTTTTCGCCGAATCACCCTCCGTGACAATGAGAGTACAC---TTTCCAGA 182809
| || || ||| |||||||| || ||||| | || | |||||| | ||||
Sbjct 351531 CATTGCCAGACCTTTAGCCGAATCGCCTTCCGTCAGGATCAAGGTACACTGGTATCCA-- 351588
Query 182810 TTGTGCCGTACCCGCCTTGTTCGCGTCATCCAACTTGGG 182848
| | |||||| || ||||| || ||| | ||||||
Sbjct 351589 -TCTTTCGTACCAGCTTTGTTGGCATCAGTAAGCTTGGG 351626
Score = 82.4 bits (90), Expect = 1e-10
Identities = 212/317 (67%), Gaps = 6/317 (2%)
Strand=Plus/Minus
Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 11689
|||||||| ||||||||||| | || |||||| ||||| | |||| || | || ||
Sbjct 5603677 GCATCAATTTCATCAATGAAAATGATGCATGGTGTATTTTTCCTGGCGTTTGCGAAAAGG 5603618
Query 11690 TCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGT--TTGCGGCAGAGC 11747
|| || || | || ||| || || || ||||| || || || | || || || |
Sbjct 5603617 TCTCGCACTCGAGAGGGACCGACTCCGACGAACATTTCTACGAACTCAGAGCCGCTGA-C 5603559
Query 11748 ACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCG 11807
||| || ||| || || ||| || || || |||| || || || ||||| ||||
Sbjct 5603558 ACT-GAAGAAAGGTACTCCTGACTCCCCGGCTGTGGCCTTCGCCAGTAGCGTCTTACCCG 5603500
Query 11808 TACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAATATC 11867
|||| ||| ||| | |||| ||| || || || ||||| || || || ||||
Sbjct 5603499 TACCAGGCGGACCAGATAGAATGGCACCGCGAGGTATCTTTGCGCCTAGTCTCTGATATT 5603440
Query 11868 TCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTT-CATCTTTGGCCGCGTCAATC 11926
| |||| || | ||| ||||| ||| || || |||| || || |||| ||
Sbjct 5603439 GACCTGGTTCTTTCAAAAAGCTCACAAACTCCATAATTTCCATC-TTCGCTTCGTCCATA 5603381
Query 11927 CCCTCAACATCACTGAA 11943
||| ||||||| ||||
Sbjct 5603380 CCCGCAACATCCTTGAA 5603364
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628031945047200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |