Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3 149 8e-31 seq1 102 1e-16 >seq3 Length=5817774 Score = 149 bits (164), Expect = 8e-31 Identities = 445/684 (65%), Gaps = 11/684 (2%) Strand=Plus/Plus Query 111473 TAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAG 111532 |||||||| |||||||| ||||| |||| | || || || || | | || || Sbjct 3751508 TAGAGGGCCTCAAACTCGTCACCGTATACGTCAGCCAGGCCCGGAGCTTCATTGGGGCAA 3751567 Query 111533 AAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGG 111592 || || | ||||| || | ||| || ||||||||||| || ||||| |||| || Sbjct 3751568 AACAGCGTCCATTCGGCATTCTTCTCGACACGCTTCATGAAGAGATCTGGGGTCCAAAGA 3751627 Query 111593 GATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGG 111652 | | | ||||| || | || | || || | || || || || || || | | Sbjct 3751628 GCTAAGAAGAGGTCACGGGCGCGGACTTCCTCCTTGCCGTGATTCTTGCGCAAGTCCAAG 3751687 Query 111653 AACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC 111712 ||||| | || ||| |||||||| |||||||| ||||| |||| | || | | ||| Sbjct 3751688 AACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGACGGCGAACGCACC---TGGCCGC 3751744 Query 111713 ------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATA 111766 || |||| | ||||| | || ||| || || ||||| ||||| || | Sbjct 3751745 TTGTTACCTCCTTGGTCGACATATCTTGCGGTGTTATTGAAGACGCGGAGCATAGGCACG 3751804 Query 111767 ATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGG 111826 || || | || |||||||| || ||| ||| ||||||| | | ||| Sbjct 3751805 ATCCCGTTGGAAGATCCATTTGTGCCGGCAATGTAAGAGCCGGTGGCTCTGATACGATGT 3751864 Query 111827 ATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCA 111886 | || || ||| || || || ||| ||| || || ||||| | | | || | Sbjct 3751865 ACGTTCAGCCCGATGCCTCCCGCCGTCTTCGAAATCAAGGCACAGGTCTTCAAGGTATCG 3751924 Query 111887 TAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGT 111946 || ||||| | || |||||| || || |||| ||||| ||| | |||||||||| Sbjct 3751925 TAAATACCCTCAATGCTGTCCTCTTTCATGTCGATGAGGAAACAAGACGCCATCTGCGGT 3751984 Query 111947 CTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACAT 112005 || ||||||||||||||||| ||||| | ||||| |||| ||| | |||||||| Sbjct 3751985 TGCGGGGTACCAGCATTGAAGAGAGTTGGCGAGGCGTGTGTGAA-GTACTTCTGGGACAT 3752043 Query 112006 CTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCG 112065 || || ||||| | ||| ||||| || || || ||||| | || || || Sbjct 3752044 GAGGTTATAGGTCTCGAGGACCTTCTCAATATCATCGCCCCAAATGCCAACAGCAACACG 3752103 Query 112066 CATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTT 112125 ||| | ||||| || || | || || |||||| || || | ||||| | Sbjct 3752104 CATTATCATGTGTTGAGGTCTCTCAGCGACCTTGCCATTAAGACGAAGTAGATAAGACCG 3752163 Query 112126 CTCAAGGGTTTTGAGACCAAAGTA 112149 ||| ||||| |||| ||||||||| Sbjct 3752164 CTCGAGGGTCTTGAAACCAAAGTA 3752187 Score = 104 bits (114), Expect = 3e-17 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 111242 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAT 111301 || |||||||||||||| || |||||| | || ||||| | |||||| || || Sbjct 3751222 GAAGCCAAATTGCAAACTGCTACCTCATCTGGTGCAGTATACTCGACAATTTCGGTGCAG 3751281 Query 111302 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCC 111361 | || || || ||| || || | |||||||||||| ||||| ||| ||||| || Sbjct 3751282 AGATTCGAGCTGCGAATTGTGCCGAGATTCTTTTGGTTGCTCTTGCGGTTACACGCGTCT 3751341 Query 111362 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAAT 111408 ||||| |||||| |||| | || ||||||||||| | || |||||| Sbjct 3751342 TTGTACAGCATGAAGGGGTTGCCGGTCTCCGTCTGGGCTTCGAGAAT 3751388 >seq1 Length=10671843 Score = 102 bits (112), Expect = 1e-16 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 122671 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCC 122730 || |||||||| || || || |||||||| ||||||||| ||||| ||||| ||||| Sbjct 3823246 TGAAGACCCTCGTCGCGAGAGATAAGTTCGTTTGAGAAGGTCAGACCCGGCATAAGACCG 3823187 Query 122731 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 122790 |||||||| | ||| | || | ||| || ||| |||||||||||||| ||| Sbjct 3823186 CGCTTCTTAAGCCAGAAGATGGAAGCGAAAGAACCGCTAAAGAAGATACCCTCAACAGCA 3823127 Query 122791 GCAAACGCAAAAAGGCGTTCGGCGAAGG-AGCGAGACTTTGCATCAAACCATTTCATTGC 122849 || || |||| |||||||| || |||| || | ||| | | | |||||| || || Sbjct 3823126 GCGAAGGCAACAAGGCGTTGAGCAAAGGTAGAG-TTCTTATCTTGGATCCATTTGATAGC 3823068 Query 122850 CCATTTCGCCTTCTT 122864 ||| | || ||||| Sbjct 3823067 CCAGTCGGCTTTCTT 3823053 Score = 89.7 bits (98), Expect = 6e-13 Identities = 225/339 (66%), Gaps = 20/339 (6%) Strand=Plus/Plus Query 182520 CCCTTGATGTGAGAACCATCATTATCGGCATCTGTCATAATCATAAGACGACCATAGCGA 182579 || ||||| || ||| |||| ||| ||| ||||| ||||| | | |||||||| Sbjct 351298 CCTTTGATATGGCTACCGTCATGATCCTGATCCGTCATGATCATGATGTGTCCATAGCGG 351357 Query 182580 AG-----TTCAGAAACATCTTGGTAGTCTTTTCCTTGT--TGAAGACCAAGGATCTTCTT 182632 || | ||| || ||||| || | ||||| | ||| || | || |||||| Sbjct 351358 AGACTCTTGCAG-----TCCTGGTAATCCGT--CTTGTGCTTAAGCCCTATGAACTTCTT 351410 Query 182633 GAGATCATTGAACTCCTGGTTTGATGTAAGCTGTGCCACCGAAGCGTCCCGAACATTCTT 182692 || | | | |||| ||| | | ||| | ||||| ||||| |||||||| Sbjct 351411 GATGTTTTGTATCTCCGCGTTCTTCGAGATCTGGTCAACCGAGGCGTCTCGAACATTGAG 351470 Query 182693 ACATTTACCGCGAAGTGGGAACACACCGTAGTGATCACGACCAACGACAGAGAGACCCGC 182752 | ||||| ||||| ||||| ||||| || ||||| | |||||||||||| | || || Sbjct 351471 AAGCTTACCACGAAGGGGGAAAACACCAAAGAGATCAGGCCCAACGACAGAGCGCCCTGC 351530 Query 182753 AACCGCGAGGGTTTTCGCCGAATCACCCTCCGTGACAATGAGAGTACAC---TTTCCAGA 182809 | || || ||| |||||||| || ||||| | || | |||||| | |||| Sbjct 351531 CATTGCCAGACCTTTAGCCGAATCGCCTTCCGTCAGGATCAAGGTACACTGGTATCCA-- 351588 Query 182810 TTGTGCCGTACCCGCCTTGTTCGCGTCATCCAACTTGGG 182848 | | |||||| || ||||| || ||| | |||||| Sbjct 351589 -TCTTTCGTACCAGCTTTGTTGGCATCAGTAAGCTTGGG 351626 Score = 82.4 bits (90), Expect = 1e-10 Identities = 212/317 (67%), Gaps = 6/317 (2%) Strand=Plus/Minus Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 11689 |||||||| ||||||||||| | || |||||| ||||| | |||| || | || || Sbjct 5603677 GCATCAATTTCATCAATGAAAATGATGCATGGTGTATTTTTCCTGGCGTTTGCGAAAAGG 5603618 Query 11690 TCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGT--TTGCGGCAGAGC 11747 || || || | || ||| || || || ||||| || || || | || || || | Sbjct 5603617 TCTCGCACTCGAGAGGGACCGACTCCGACGAACATTTCTACGAACTCAGAGCCGCTGA-C 5603559 Query 11748 ACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCG 11807 ||| || ||| || || ||| || || || |||| || || || ||||| |||| Sbjct 5603558 ACT-GAAGAAAGGTACTCCTGACTCCCCGGCTGTGGCCTTCGCCAGTAGCGTCTTACCCG 5603500 Query 11808 TACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAATATC 11867 |||| ||| ||| | |||| ||| || || || ||||| || || || |||| Sbjct 5603499 TACCAGGCGGACCAGATAGAATGGCACCGCGAGGTATCTTTGCGCCTAGTCTCTGATATT 5603440 Query 11868 TCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTT-CATCTTTGGCCGCGTCAATC 11926 | |||| || | ||| ||||| ||| || || |||| || || |||| || Sbjct 5603439 GACCTGGTTCTTTCAAAAAGCTCACAAACTCCATAATTTCCATC-TTCGCTTCGTCCATA 5603381 Query 11927 CCCTCAACATCACTGAA 11943 ||| ||||||| |||| Sbjct 5603380 CCCGCAACATCCTTGAA 5603364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031945047200