Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq3 147 3e-30 seq1 116 5e-21 >seq3 Length=5817774 Score = 147 bits (162), Expect = 3e-30 Identities = 467/717 (65%), Gaps = 9/717 (1%) Strand=Plus/Plus Query 118947 TAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAG 119006 |||||||| |||||||| ||||| | || | || || || || | || ||||| Sbjct 3751508 TAGAGGGCCTCAAACTCGTCACCGTATACGTCAGCCAGGCCCGGAGCTTCATTGGGGCAA 3751567 Query 119007 AAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGC 119066 || || | ||||| || || ||| || |||||||||||||| |||||| |||| || Sbjct 3751568 AACAGCGTCCATTCGGCATTCTTCTCGACACGCTTCATGAAGAGATCTGGGGTCCAAAGA 3751627 Query 119067 GCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAA 119126 || ||||||| || || ||| |||| || | || ||||| ||||| ||||| Sbjct 3751628 GCTAAGAAGAGGTCACGGGCGCGGACTTCCTCCTTGCCGTGATTCTTGCGCAAGTCCAAG 3751687 Query 119127 AAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGAC-- 119184 || || | || ||| |||||||| || || ||||| || |||| | | ||| | | Sbjct 3751688 AACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGACGGCGAACG-CACCTGGCCGCTT 3751746 Query 119185 --GACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGAT 119242 ||| | |||| ||||| || || ||| || || || || ||||| || | ||| Sbjct 3751747 GTTACCTCCTTGGTCGACATATCTTGCGGTGTTATTGAAGACGCGGAGCATAGGCACGAT 3751806 Query 119243 ACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGAT 119302 || | ||| |||||||| || ||| ||| ||||||||| | || | Sbjct 3751807 CCCGTTGGAAGATCCATTTGTGCCGGCAATGTAAGAGCCGGTGGCTCTGATACGATGTAC 3751866 Query 119303 GTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTA 119362 || || || || || || ||| ||| || || || || | | | | |||| Sbjct 3751867 GTTCAGCCCGATGCCTCCCGCCGTCTTCGAAATCAAGGCACAGGTCTTCAAGGTATCGTA 3751926 Query 119363 GATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCT 119422 || || || || ||| | || | |||||||||| || || ||| || || Sbjct 3751927 AATACCCTCAATGCTGTCCTCTTTCATGTCGATGAGGAAACAAGACGCCATCTGCGGTTG 3751986 Query 119423 GGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCT 119481 || |||||||| |||||||||||||| | ||||| |||| ||| | |||||||| Sbjct 3751987 CGGGGTACCAGCATTGAAGAGAGTTGGCGAGGCGTGTGTGAA-GTACTTCTGGGACATGA 3752045 Query 119482 TGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCA 119541 || |||||||| | ||| ||| || || || ||| || | | || |||| Sbjct 3752046 GGTTATAGGTCTCGAGGACCTTCTCAATATCATCGCCCCAAATGCCAACAGCAACACGCA 3752105 Query 119542 TAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCT 119601 | | ||||| ||| ||| | || | | |||| || | | || ||| | || Sbjct 3752106 TTATCATGTGTTGAGGTCTCTCAGCGACCTTGCCATTAAGACGAAGTAGATAAGACCGCT 3752165 Query 119602 CCAAGGTCTTGAGACCAAAATAGCCAAAATCGTAGTCCCGCTTCGT-GACGATGTCA 119657 | | |||||||| |||||| || | | | | |||| || |||| ||||||| || Sbjct 3752166 CGAGGGTCTTGAAACCAAAGTATTGATAGTTGAAGTCTCG-ATCGTAGACGATGGCA 3752221 >seq1 Length=10671843 Score = 116 bits (128), Expect = 5e-21 Identities = 299/451 (66%), Gaps = 6/451 (1%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATT--CTCCA 129785 ||||| ||||||||||||||||||||||| ||||| ||| |||| |||||| ||||| Sbjct 3823546 TAGTCACCAACCCGCTTCTCGAAGAAGTTGGTCTTGCCGGCCAA--TGATATCGACTCCA 3823489 Query 129786 TAAAATCAAATGGGTTCTTTGAGTTCCAA-ATTGCTGGCACTCCAATCTGTTTGAGGAGA 129844 | || || ||||| || | | ||| | | | |||| || | | ||| ||| Sbjct 3823488 TGAAGTCGAATGGATTTGTCGCGTTGTAGTACTTCTGGTTA-CCGAGAGCTAGGAGTAGA 3823430 Query 129845 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTA 129904 ||||| | ||| | || ||||| | |||| | | ||||||||| | || Sbjct 3823429 CGATCTGCCACGAATTCGATGTATTGCTTCATCAGACCCGCGTTCATACCTAACAGAGCG 3823370 Query 129905 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCG 129964 || || || || || | |||| | | ||| ||| || || || | || | Sbjct 3823369 CAAGGTAGAGCCTCTGTCAAGAACTCTTGCTCGATGGTGACGGCCTCAGTAATGACATCT 3823310 Query 129965 TGAATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTCC 130024 |||| | || | ||| |||| ||| | | |||||| ||| || || Sbjct 3823309 TGAACAGCCTGCTTGCTTGGTCGGTTGTTGAGATGAGAGAAGAGGAGGCAGGCGAAGTCA 3823250 Query 130025 TGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGA 130084 || ||||||||||| || ||||| ||||| || |||||| |||||| ||||| ||| Sbjct 3823249 GTATGAAGACCCTCGTCGCGAGAGATAAGTTCGTTTGAGAAGGTCAGACCCGGCATAAGA 3823190 Query 130085 CCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 130144 || |||||||| | |||||| || | | || || || |||||||| ||||| ||| Sbjct 3823189 CCGCGCTTCTTAAGCCAGAAGATGGAAGCGAAAGAACCGCTAAAGAAGATACCCTCAACA 3823130 Query 130145 CACGCGAACGCAAAGAGACGCTCAGCAAAGG 130175 ||||| |||| || || | |||||||| Sbjct 3823129 GCAGCGAAGGCAACAAGGCGTTGAGCAAAGG 3823099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618435145886920