Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq3 147 3e-30
seq1 116 5e-21
>seq3
Length=5817774
Score = 147 bits (162), Expect = 3e-30
Identities = 467/717 (65%), Gaps = 9/717 (1%)
Strand=Plus/Plus
Query 118947 TAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAG 119006
|||||||| |||||||| ||||| | || | || || || || | || |||||
Sbjct 3751508 TAGAGGGCCTCAAACTCGTCACCGTATACGTCAGCCAGGCCCGGAGCTTCATTGGGGCAA 3751567
Query 119007 AAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGC 119066
|| || | ||||| || || ||| || |||||||||||||| |||||| |||| ||
Sbjct 3751568 AACAGCGTCCATTCGGCATTCTTCTCGACACGCTTCATGAAGAGATCTGGGGTCCAAAGA 3751627
Query 119067 GCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAA 119126
|| ||||||| || || ||| |||| || | || ||||| ||||| |||||
Sbjct 3751628 GCTAAGAAGAGGTCACGGGCGCGGACTTCCTCCTTGCCGTGATTCTTGCGCAAGTCCAAG 3751687
Query 119127 AAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGAC-- 119184
|| || | || ||| |||||||| || || ||||| || |||| | | ||| | |
Sbjct 3751688 AACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGACGGCGAACG-CACCTGGCCGCTT 3751746
Query 119185 --GACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGAT 119242
||| | |||| ||||| || || ||| || || || || ||||| || | |||
Sbjct 3751747 GTTACCTCCTTGGTCGACATATCTTGCGGTGTTATTGAAGACGCGGAGCATAGGCACGAT 3751806
Query 119243 ACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGAT 119302
|| | ||| |||||||| || ||| ||| ||||||||| | || |
Sbjct 3751807 CCCGTTGGAAGATCCATTTGTGCCGGCAATGTAAGAGCCGGTGGCTCTGATACGATGTAC 3751866
Query 119303 GTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTA 119362
|| || || || || || ||| ||| || || || || | | | | ||||
Sbjct 3751867 GTTCAGCCCGATGCCTCCCGCCGTCTTCGAAATCAAGGCACAGGTCTTCAAGGTATCGTA 3751926
Query 119363 GATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCT 119422
|| || || || ||| | || | |||||||||| || || ||| || ||
Sbjct 3751927 AATACCCTCAATGCTGTCCTCTTTCATGTCGATGAGGAAACAAGACGCCATCTGCGGTTG 3751986
Query 119423 GGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCT 119481
|| |||||||| |||||||||||||| | ||||| |||| ||| | ||||||||
Sbjct 3751987 CGGGGTACCAGCATTGAAGAGAGTTGGCGAGGCGTGTGTGAA-GTACTTCTGGGACATGA 3752045
Query 119482 TGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCA 119541
|| |||||||| | ||| ||| || || || ||| || | | || ||||
Sbjct 3752046 GGTTATAGGTCTCGAGGACCTTCTCAATATCATCGCCCCAAATGCCAACAGCAACACGCA 3752105
Query 119542 TAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCT 119601
| | ||||| ||| ||| | || | | |||| || | | || ||| | ||
Sbjct 3752106 TTATCATGTGTTGAGGTCTCTCAGCGACCTTGCCATTAAGACGAAGTAGATAAGACCGCT 3752165
Query 119602 CCAAGGTCTTGAGACCAAAATAGCCAAAATCGTAGTCCCGCTTCGT-GACGATGTCA 119657
| | |||||||| |||||| || | | | | |||| || |||| ||||||| ||
Sbjct 3752166 CGAGGGTCTTGAAACCAAAGTATTGATAGTTGAAGTCTCG-ATCGTAGACGATGGCA 3752221
>seq1
Length=10671843
Score = 116 bits (128), Expect = 5e-21
Identities = 299/451 (66%), Gaps = 6/451 (1%)
Strand=Plus/Minus
Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATT--CTCCA 129785
||||| ||||||||||||||||||||||| ||||| ||| |||| |||||| |||||
Sbjct 3823546 TAGTCACCAACCCGCTTCTCGAAGAAGTTGGTCTTGCCGGCCAA--TGATATCGACTCCA 3823489
Query 129786 TAAAATCAAATGGGTTCTTTGAGTTCCAA-ATTGCTGGCACTCCAATCTGTTTGAGGAGA 129844
| || || ||||| || | | ||| | | | |||| || | | ||| |||
Sbjct 3823488 TGAAGTCGAATGGATTTGTCGCGTTGTAGTACTTCTGGTTA-CCGAGAGCTAGGAGTAGA 3823430
Query 129845 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTA 129904
||||| | ||| | || ||||| | |||| | | ||||||||| | ||
Sbjct 3823429 CGATCTGCCACGAATTCGATGTATTGCTTCATCAGACCCGCGTTCATACCTAACAGAGCG 3823370
Query 129905 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCG 129964
|| || || || || | |||| | | ||| ||| || || || | || |
Sbjct 3823369 CAAGGTAGAGCCTCTGTCAAGAACTCTTGCTCGATGGTGACGGCCTCAGTAATGACATCT 3823310
Query 129965 TGAATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTCC 130024
|||| | || | ||| |||| ||| | | |||||| ||| || ||
Sbjct 3823309 TGAACAGCCTGCTTGCTTGGTCGGTTGTTGAGATGAGAGAAGAGGAGGCAGGCGAAGTCA 3823250
Query 130025 TGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGA 130084
|| ||||||||||| || ||||| ||||| || |||||| |||||| ||||| |||
Sbjct 3823249 GTATGAAGACCCTCGTCGCGAGAGATAAGTTCGTTTGAGAAGGTCAGACCCGGCATAAGA 3823190
Query 130085 CCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 130144
|| |||||||| | |||||| || | | || || || |||||||| ||||| |||
Sbjct 3823189 CCGCGCTTCTTAAGCCAGAAGATGGAAGCGAAAGAACCGCTAAAGAAGATACCCTCAACA 3823130
Query 130145 CACGCGAACGCAAAGAGACGCTCAGCAAAGG 130175
||||| |||| || || | ||||||||
Sbjct 3823129 GCAGCGAAGGCAACAAGGCGTTGAGCAAAGG 3823099
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618435145886920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |