Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq3 163 3e-35 seq1 129 7e-25 >seq3 Length=5817774 Score = 163 bits (180), Expect = 3e-35 Identities = 462/704 (66%), Gaps = 17/704 (2%) Strand=Plus/Minus Query 104139 GAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGC 104198 |||||| | ||| | || |||||| |||| ||||| ||| | ||||| | || | Sbjct 3752204 GAGACTTCAACTATCAATACTTTGGTTTCAAGACCCTCGAGCGGTCTTATCTACTTCGTC 3752145 Query 104199 TCGATGGT---GTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTA 104255 | |||| ||| | || | | || || ||||| | ||||| || || | || | Sbjct 3752144 TTAATGGCAAGGTC--GCTG-AGAGACCTCAACACATGATAATGCGTGTTGCTGTTGGCA 3752088 Query 104256 TTCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATG 104314 || || || || ||||| ||| | ||||| || || |||||||| | ||| Sbjct 3752087 TTTGGGGCGATGATATTGAGAAGGTCCTCGAGACCTATAACCTCATGTCCCAGAAGTAC- 3752029 Query 104315 TTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGT 104374 |||| ||||| | ||||| ||||||||||||||||| || ||| || ||| | | Sbjct 3752028 TTCACACACGCCTCGCCAACTCTCTTCAATGCTGGTACCCCGCAACCGCAGATGGCGTCT 3751969 Query 104375 TGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAG 104434 || ||||| |||| || || |||||| || | ||||| || | || | | | Sbjct 3751968 TGTTTCCTCATCGACATGAAAGAGGACAGCATTGAGGGTATTTACGATACCTTGAAGACC 3751909 Query 104435 TGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCC 104494 ||||| || || ||| ||| || || || ||| || || | ||| | | |||||| Sbjct 3751908 TGTGCCTTGATTTCGAAGACGGCGGGAGGCATCGGGCTGAACGTACATCGTATCAGAGCC 3751849 Query 104495 AATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGC 104554 | ||| ||| || |||||||| || | || || | || ||||| ||| Sbjct 3751848 ACCGGCTCTTACATTGCCGGCACAAATGGATCTTCCAACGGGATCGTGCCTATGCTCCGC 3751789 Query 104555 GTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGG------GCGTCGAAAGGGATCT 104608 || || || ||| || | ||||| | |||| || ||| | | || | Sbjct 3751788 GTCTTCAATAACACCGCAAGATATGTCGACCAAGGAGGTAACAAGCGGCCA---GGTGCG 3751732 Query 104609 ATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTC 104668 |||| ||||| |||||||| |||||||| ||| || | |||||| | || ||||| Sbjct 3751731 TTCGCCGTCTACCTTGAGCCCTGGCACGCCGATGTCTTCGAGTTCTTGGACTTGCGCAAG 3751672 Query 104669 AACCAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGAT 104728 || || || | ||||| | || ||| || ||||||| ||||| |||| |||||| Sbjct 3751671 AATCACGGCAAGGAGGAAGTCCGCGCCCGTGACCTCTTCTTAGCTCTTTGGACCCCAGAT 3751612 Query 104729 CTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCA 104788 |||||||||||| | || ||| ||| || | | ||| | || ||||| || | | || Sbjct 3751611 CTCTTCATGAAGCGTGTCGAGAAGAATGCCGAATGGACGCTGTTTTGCCCCAATGAAGCT 3751552 Query 104789 CCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTA 104832 || || || | || | ||||| |||||||| ||||| || Sbjct 3751551 CCGGGCCTGGCTGACGTATACGGTGACGAGTTTGAGGCCCTCTA 3751508 >seq1 Length=10671843 Score = 129 bits (142), Expect = 7e-25 Identities = 157/213 (74%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAGTC 94790 |||||| ||||| | |||||||| || |||||||| || ||| | |||| || || Sbjct 3823037 AGTTCCTTGTATCCGCAAGAAAGCCGACTGGGCTATCAAATGGATCCAAGATAAGAACTC 3823096 Query 94791 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 94850 | |||||||| | || || | || || || |||||||||||||||||| || Sbjct 3823097 ---TACCTTTGCTCAACGCCTTGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTTAGCGG 3823153 Query 94851 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 94910 ||| ||| | || | ||||| |||||||| ||||| ||||| ||||| |||||| Sbjct 3823154 TTCTTTCGCTTCCATCTTCTGGCTTAAGAAGCGCGGTCTTATGCCGGGTCTGACCTTCTC 3823213 Query 94911 CAACGAGCTTATCTCTCGTGACGAGGGACTCCA 94943 ||||| ||||||||||| |||||||| || || Sbjct 3823214 AAACGAACTTATCTCTCGCGACGAGGGTCTTCA 3823246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260748964680