Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq3 163 3e-35
seq1 129 7e-25
>seq3
Length=5817774
Score = 163 bits (180), Expect = 3e-35
Identities = 462/704 (66%), Gaps = 17/704 (2%)
Strand=Plus/Minus
Query 104139 GAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGC 104198
|||||| | ||| | || |||||| |||| ||||| ||| | ||||| | || |
Sbjct 3752204 GAGACTTCAACTATCAATACTTTGGTTTCAAGACCCTCGAGCGGTCTTATCTACTTCGTC 3752145
Query 104199 TCGATGGT---GTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTA 104255
| |||| ||| | || | | || || ||||| | ||||| || || | || |
Sbjct 3752144 TTAATGGCAAGGTC--GCTG-AGAGACCTCAACACATGATAATGCGTGTTGCTGTTGGCA 3752088
Query 104256 TTCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATG 104314
|| || || || ||||| ||| | ||||| || || |||||||| | |||
Sbjct 3752087 TTTGGGGCGATGATATTGAGAAGGTCCTCGAGACCTATAACCTCATGTCCCAGAAGTAC- 3752029
Query 104315 TTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGT 104374
|||| ||||| | ||||| ||||||||||||||||| || ||| || ||| | |
Sbjct 3752028 TTCACACACGCCTCGCCAACTCTCTTCAATGCTGGTACCCCGCAACCGCAGATGGCGTCT 3751969
Query 104375 TGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAG 104434
|| ||||| |||| || || |||||| || | ||||| || | || | | |
Sbjct 3751968 TGTTTCCTCATCGACATGAAAGAGGACAGCATTGAGGGTATTTACGATACCTTGAAGACC 3751909
Query 104435 TGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCC 104494
||||| || || ||| ||| || || || ||| || || | ||| | | ||||||
Sbjct 3751908 TGTGCCTTGATTTCGAAGACGGCGGGAGGCATCGGGCTGAACGTACATCGTATCAGAGCC 3751849
Query 104495 AATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGC 104554
| ||| ||| || |||||||| || | || || | || ||||| |||
Sbjct 3751848 ACCGGCTCTTACATTGCCGGCACAAATGGATCTTCCAACGGGATCGTGCCTATGCTCCGC 3751789
Query 104555 GTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGG------GCGTCGAAAGGGATCT 104608
|| || || ||| || | ||||| | |||| || ||| | | || |
Sbjct 3751788 GTCTTCAATAACACCGCAAGATATGTCGACCAAGGAGGTAACAAGCGGCCA---GGTGCG 3751732
Query 104609 ATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTC 104668
|||| ||||| |||||||| |||||||| ||| || | |||||| | || |||||
Sbjct 3751731 TTCGCCGTCTACCTTGAGCCCTGGCACGCCGATGTCTTCGAGTTCTTGGACTTGCGCAAG 3751672
Query 104669 AACCAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGAT 104728
|| || || | ||||| | || ||| || ||||||| ||||| |||| ||||||
Sbjct 3751671 AATCACGGCAAGGAGGAAGTCCGCGCCCGTGACCTCTTCTTAGCTCTTTGGACCCCAGAT 3751612
Query 104729 CTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCA 104788
|||||||||||| | || ||| ||| || | | ||| | || ||||| || | | ||
Sbjct 3751611 CTCTTCATGAAGCGTGTCGAGAAGAATGCCGAATGGACGCTGTTTTGCCCCAATGAAGCT 3751552
Query 104789 CCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTA 104832
|| || || | || | ||||| |||||||| ||||| ||
Sbjct 3751551 CCGGGCCTGGCTGACGTATACGGTGACGAGTTTGAGGCCCTCTA 3751508
>seq1
Length=10671843
Score = 129 bits (142), Expect = 7e-25
Identities = 157/213 (74%), Gaps = 6/213 (3%)
Strand=Plus/Plus
Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAGTC 94790
|||||| ||||| | |||||||| || |||||||| || ||| | |||| || ||
Sbjct 3823037 AGTTCCTTGTATCCGCAAGAAAGCCGACTGGGCTATCAAATGGATCCAAGATAAGAACTC 3823096
Query 94791 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 94850
| |||||||| | || || | || || || |||||||||||||||||| ||
Sbjct 3823097 ---TACCTTTGCTCAACGCCTTGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTTAGCGG 3823153
Query 94851 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 94910
||| ||| | || | ||||| |||||||| ||||| ||||| ||||| ||||||
Sbjct 3823154 TTCTTTCGCTTCCATCTTCTGGCTTAAGAAGCGCGGTCTTATGCCGGGTCTGACCTTCTC 3823213
Query 94911 CAACGAGCTTATCTCTCGTGACGAGGGACTCCA 94943
||||| ||||||||||| |||||||| || ||
Sbjct 3823214 AAACGAACTTATCTCTCGCGACGAGGGTCTTCA 3823246
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583260748964680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |