Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq1 232 2e-55
seq2 156 1e-32
seq7 95.1 4e-14
>seq1
Length=10671843
Score = 232 bits (256), Expect = 2e-55
Identities = 898/1399 (64%), Gaps = 18/1399 (1%)
Strand=Plus/Minus
Query 349251 ATGATCGTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTG 349310
|||| || | ||||| ||||| || || || || ||| | || || || || | |||||
Sbjct 5945629 ATGACCGCATTGAAATCATTGCCAACGACCAGGGCAACCGGACGACCCCGTCGTTCGTTG 5945570
Query 349311 CATTTACCGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATC 349370
| || ||||| || |||||| | || || || || || || || || | || || |
Sbjct 5945569 CTTTCACCGACACCGAGCGTCTCATCGGCGACTCAGCCAAGAACCAGGTCGCCATGAACC 5945510
Query 349371 CAAAAAATACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGA--CAAATC 349428
| | ||| || || || ||||| ||||| || || ||| | | || | || | |
Sbjct 5945509 CGACAAACACAGTCTTCGATGCCAAGCGTCTCATCGGTCGTAAATTCGCCGATGCTGAGG 5945450
Query 349429 TACACAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGG-TGATAAAC 349487
| || | || | || ||||| || || | || || | ||| || || || |
Sbjct 5945449 TGCAGG--CCGACATGAAGCATTTCCCGTTCAAAGTCGT----AGAGAAGGCTGGGAAGC 5945396
Query 349488 CAATTATTGAGGTTGAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCA 349546
|| | || |||| || | || || || || || || ||| ||| ||||| || |||
Sbjct 5945395 CAGTGATCCAGGTCGAGTTCAAGGGCGAGACCAAGTCA-TTTACACCAGAAGAGATCTCA 5945337
Query 349547 TCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACT 349606
|||||||| || || |||| ||| | || || |||| || |||| || || |
Sbjct 5945336 TCAATGGTCTTGACCAAGATGAGGGAGACCGCCGAGTCATACTTGGGTGGCACCGTCAAC 5945277
Query 349607 GATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGAT 349666
| || || | ||||| || ||||| || || || ||||||| |||||||| |||
Sbjct 5945276 AACGCCGTCGTCACTGTCCCCGCCTACTTCAACGACTCCCAGCGCCAAGCAACAAAGGAT 5945217
Query 349667 GCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCA 349726
||||| || || || |||| || ||| | || || || || ||||| || || ||
Sbjct 5945216 GCTGGTCTGATCGCTGGTCTAAACGTCCTACGTATTATCAACGAGCCCACCGCCGCTGCT 5945157
Query 349727 ATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTA 349786
||||| || || ||||| || | | ||| || ||| |||| || || || ||
Sbjct 5945156 ATTGCCTACGGTCTTGACAAGAAAACTGAGGGCGAGCGCAATGTTCTCATATTCGACTTG 5945097
Query 349787 GGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAA 349846
|||||||| || || ||||| ||||| | || | || ||||| ||||| || || ||
Sbjct 5945096 GGTGGTGGAACCTTCGATGTCTCACTCTTGACCATCGAGGAGGGTATTTTCGAGGTCAAG 5945037
Query 349847 GCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCAT 349906
| ||||| ||||| || ||| | || || || || || || || || || || ||
Sbjct 5945036 TCGACTGCCGGTGACACGCATTTGGGCGGTGAGGACTTCGACAACCGCCTGGTGAACCAC 5944977
Query 349907 TTTGTTAAAGAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAAT 349965
|| || || || || ||||| ||||| || | ||| || || || | || |
Sbjct 5944976 TTCGTCAACGAGTTCAAGCG-CAAGCACAAGAAGGATCTTTCCACCAACGCTCGTGCTCT 5944918
Query 349966 GCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAAC 350025
|||||| || |||| || || || || || || || | | ||||| | | |||||
Sbjct 5944917 GCGTCGTCTCCGAACAGCTTGCGAGCGGGCCAAACGCACTCTCTCATCATCGGCACAAAC 5944858
Query 350026 CTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGC 350085
||| |||||||| || || || || || | || |||| | || || || |||||
Sbjct 5944857 CTCGATTGAAATCGACTCCCTATACGAAGGTATCGACTTCTACACCTCCATCACCCGTGC 5944798
Query 350086 TCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGT 350145
|| || || || | || ||| || || | | || ||||| ||||| || ||
Sbjct 5944797 CCGTTTCGAGGAGCTTTGCCAGGACCTGTTCCGCTCCACCATGGAGCCTGTTGAGCGTGT 5944738
Query 350146 ATTAAAAGATGCAAAAAT-GTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTT 350204
| || || || || | | | || | | | || | || || || |||||||
Sbjct 5944737 CCTTCGTGACGCCAAGATCGACAAGTCCTCCG-TCCACGAGATCGTCTTGGTCGGTGGTT 5944679
Query 350205 CTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTT 350264
| || |||||||| || | || || | | || || || || || ||||| || ||
Sbjct 5944678 CCACCCGTATTCCCAAGATCCAGAAGCTTGTTTCCGACTTCTTCAACGGCAAGGAGCCCA 5944619
Query 350265 CTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTT 350324
|| ||||| || || ||||| ||||| ||||| ||||| || || ||||| | ||
Sbjct 5944618 ACAGGTCAATCAACCCCGATGAGGCTGTCGCATACGGTGCCGCCGTCCAGGCCGCCATCC 5944559
Query 350325 TATCTGGAAATAAGAGTTCTAA---AATTGATGATCTATTACTACTAGATGTAACTCCAC 350381
| || || | | || || | | || | |||| || ||||| |||||
Sbjct 5944558 TCTCCGGTGACACCTCATCCAAGTCGACCAACGAAATCCTACTTCTCGATGTCTCTCCAT 5944499
Query 350382 TTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTA 350441
| || ||||| | || || |||||| || ||||| | || || | || | |
Sbjct 5944498 TGTCCCTTGGTATCGAGACCGCTGGTGGTGTCATGACGGCACTCATCAAGCGGAACACCA 5944439
Query 350442 CTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAA 350501
| | || ||||| ||||| | || || ||||| | || || ||||| | ||
Sbjct 5944438 CCATCCCAACAAAGAAGTCTGAGGTGTTCTCGACATTCTCTGACAACCAGCCGGGAGTGT 5944379
Query 350502 CAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAAT 350561
|| || || || || || || |||||||| || || || || || ||| || | |
Sbjct 5944378 TGATCCAGGTCTTCGAGGGCGAGCGTGCTCGTACCAAGGACAACAACCTACTGGGCAAGT 5944319
Query 350562 TTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCG 350621
| || | || || ||||| || | || |||||||| ||||| || | ||||
Sbjct 5944318 TCGAGCTTACTGGTATCCCACCCGCTCCACGTGGTGTTCCTCAAATTGAGGTTACCTTCG 5944259
Query 350622 ATATTGATTCAAATGGTAT 350640
|| |||| | || |||||
Sbjct 5944258 ATCTTGACGCCAACGGTAT 5944240
>seq2
Length=7009248
Score = 156 bits (172), Expect = 1e-32
Identities = 173/231 (75%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
||| |||||||||| | || ||||| || || || |||||||| ||||| || |||||
Sbjct 3059406 CATTCCACCACGTAGACGAAGGACAAGGTGGAGGGTTGACTCTTTCTGAATGTTGTAATC 3059347
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | ||| | |||||| || || || || || ||||| || ||||| || ||||| ||
Sbjct 3059346 GGAAAGTGTCCTCCCATCCTCCAGCTGCTTGCCGGCAAATATGAGACGCTGTTGATCCGG 3059287
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || |||||||||||||| || || | || ||||| || || | || || | ||
Sbjct 3059286 TGGGATGCCTTCTTTATCCTGTATCTTCGACTTCACATTGTCGATGGTGTCTGACGACTC 3059227
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|||||| || |||| ||||| || || ||||| || || || ||||||||
Sbjct 3059226 AACTTCGAGGGTAATAGTCTTGCCAGTCAGTGTCTTGACGAAGATCTGCAT 3059176
Score = 122 bits (134), Expect = 3e-22
Identities = 166/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569
||| ||||| | || || || | ||| || || ||| || || || || ||||| ||
Sbjct 3059859 ACCGCCACGAAGCCTAAGCACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAATCCGA 3059800
Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629
|| ||||| ||||| || || || || |||||||| || | ||| ||||| || || ||
Sbjct 3059799 CAACGTTCGGCCATCCTCCAGCTGCTTCCCAGCAAAAATCAAACGCTGCTGGTCCGGCGG 3059740
Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTA-CATTATCAATCGAATCAGATGGTTCAA 140688
|| || ||||| ||||| || || ||| ||| | || ||||||| || || ||||
Sbjct 3059739 GATACCCTCTTTGTCCTGGATCTT-GCTCTTAACGTTGTCAATCGTGTCGGAACTCTCAA 3059681
Query 140689 CTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|||| | || | ||||||||||| || || || ||||| ||||||||
Sbjct 3059680 CTTCCAAGGTGATCGTCTTTCCGGTAAGCGTCTTGACAAAGATCTGCAT 3059632
>seq7
Length=1695519
Score = 95.1 bits (104), Expect = 4e-14
Identities = 106/140 (76%), Gaps = 4/140 (3%)
Strand=Plus/Plus
Query 377450 CTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGA 377509
|||||| ||| || ||||| ||| |||||| || || | ||||||||||| ||||
Sbjct 279086 CTTCAA-GCGGGGTACACCCAATGTGACATTC---TTCGAGGAGACACCAGCAAAATGGA 279141
Query 377510 AAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAA 377569
| || || ||||| | ||| |||| |||||||| ||||| || || || | || ||||
Sbjct 279142 ACGTGTTCAGAGTCATTTGTGTAGCCGGCTCACCGATTGATTGTGCGGCTAGCACACCAA 279201
Query 377570 CCATTTCTCCAGGATTGACA 377589
|||| |||||||| || |||
Sbjct 279202 CCATCTCTCCAGGGTTCACA 279221
Score = 87.8 bits (96), Expect = 5e-12
Identities = 222/331 (67%), Gaps = 10/331 (3%)
Strand=Plus/Plus
Query 378121 TCAAATCCATCATCTCCATATGAGAATTGAACAATTTTATCTTTATTG---TTTCTTACA 378177
|| || ||||| || || || |||||||||||| |||| | | || || ||
Sbjct 279771 TCTAAACCATCTTCACCGTAAATGAATTGAACAAT---ATCTCCAAGGGAGTTCCTAACT 279827
Query 378178 GTCATATCATATCTAACCATTAAATCTTCTAATGCTTTAA-TAAGTCGTCGAGAAATATA 378236
|| ||| || | |||| | ||| || | ||||| | |||| || || ||||||
Sbjct 279828 GTGCCATCGTACTTCGCCATGACATCCTCCAGCGCTTTGACTAAG-CGGCGTTGAATATA 279886
Query 378237 ACCAGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATG 378296
||||||| || || || || ||||| || | ||| | || ||| |||| |||||
Sbjct 279887 GCCAGTTTCTGCCGTCTTCACCGCGGTATCGATGAGACCTTCTCGGCCAGCCATAGCATG 279946
Query 378297 GAAGAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGC 378356
|||||| ||||| || || || || || | | | ||| |||| | ||||||||| |
Sbjct 279947 GAAGAAGAATTCCGTGGGCGTGAGGCCCCTTAGGTAGGAATTCTCGACAAATCCTCTCGA 280006
Query 378357 GCCTGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGAT-TCTCAAACCCATATG 378415
| || |||| |||| || || | ||||| | || |||| | | ||||| | | |
Sbjct 280007 TTCCGGAGAATAGTCATCCTTGGTGAAGTGAGGCAGCGTTCGATATTTGAAACCGA-ACG 280065
Query 378416 GAATTCGTTTTCCATCAACATTCTGTTGACC 378446
|||| ||||| || || || |||||| ||
Sbjct 280066 GAATGCGTTTGCCCTCCACCGACTGTTGCCC 280096
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515254264100621
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