Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1 232 2e-55 seq2 156 1e-32 seq7 95.1 4e-14 >seq1 Length=10671843 Score = 232 bits (256), Expect = 2e-55 Identities = 898/1399 (64%), Gaps = 18/1399 (1%) Strand=Plus/Minus Query 349251 ATGATCGTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTG 349310 |||| || | ||||| ||||| || || || || ||| | || || || || | ||||| Sbjct 5945629 ATGACCGCATTGAAATCATTGCCAACGACCAGGGCAACCGGACGACCCCGTCGTTCGTTG 5945570 Query 349311 CATTTACCGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATC 349370 | || ||||| || |||||| | || || || || || || || || | || || | Sbjct 5945569 CTTTCACCGACACCGAGCGTCTCATCGGCGACTCAGCCAAGAACCAGGTCGCCATGAACC 5945510 Query 349371 CAAAAAATACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGA--CAAATC 349428 | | ||| || || || ||||| ||||| || || ||| | | || | || | | Sbjct 5945509 CGACAAACACAGTCTTCGATGCCAAGCGTCTCATCGGTCGTAAATTCGCCGATGCTGAGG 5945450 Query 349429 TACACAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGG-TGATAAAC 349487 | || | || | || ||||| || || | || || | ||| || || || | Sbjct 5945449 TGCAGG--CCGACATGAAGCATTTCCCGTTCAAAGTCGT----AGAGAAGGCTGGGAAGC 5945396 Query 349488 CAATTATTGAGGTTGAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCA 349546 || | || |||| || | || || || || || || ||| ||| ||||| || ||| Sbjct 5945395 CAGTGATCCAGGTCGAGTTCAAGGGCGAGACCAAGTCA-TTTACACCAGAAGAGATCTCA 5945337 Query 349547 TCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACT 349606 |||||||| || || |||| ||| | || || |||| || |||| || || | Sbjct 5945336 TCAATGGTCTTGACCAAGATGAGGGAGACCGCCGAGTCATACTTGGGTGGCACCGTCAAC 5945277 Query 349607 GATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGAT 349666 | || || | ||||| || ||||| || || || ||||||| |||||||| ||| Sbjct 5945276 AACGCCGTCGTCACTGTCCCCGCCTACTTCAACGACTCCCAGCGCCAAGCAACAAAGGAT 5945217 Query 349667 GCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCA 349726 ||||| || || || |||| || ||| | || || || || ||||| || || || Sbjct 5945216 GCTGGTCTGATCGCTGGTCTAAACGTCCTACGTATTATCAACGAGCCCACCGCCGCTGCT 5945157 Query 349727 ATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTA 349786 ||||| || || ||||| || | | ||| || ||| |||| || || || || Sbjct 5945156 ATTGCCTACGGTCTTGACAAGAAAACTGAGGGCGAGCGCAATGTTCTCATATTCGACTTG 5945097 Query 349787 GGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAA 349846 |||||||| || || ||||| ||||| | || | || ||||| ||||| || || || Sbjct 5945096 GGTGGTGGAACCTTCGATGTCTCACTCTTGACCATCGAGGAGGGTATTTTCGAGGTCAAG 5945037 Query 349847 GCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCAT 349906 | ||||| ||||| || ||| | || || || || || || || || || || || Sbjct 5945036 TCGACTGCCGGTGACACGCATTTGGGCGGTGAGGACTTCGACAACCGCCTGGTGAACCAC 5944977 Query 349907 TTTGTTAAAGAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAAT 349965 || || || || || ||||| ||||| || | ||| || || || | || | Sbjct 5944976 TTCGTCAACGAGTTCAAGCG-CAAGCACAAGAAGGATCTTTCCACCAACGCTCGTGCTCT 5944918 Query 349966 GCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAAC 350025 |||||| || |||| || || || || || || || | | ||||| | | ||||| Sbjct 5944917 GCGTCGTCTCCGAACAGCTTGCGAGCGGGCCAAACGCACTCTCTCATCATCGGCACAAAC 5944858 Query 350026 CTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGC 350085 ||| |||||||| || || || || || | || |||| | || || || ||||| Sbjct 5944857 CTCGATTGAAATCGACTCCCTATACGAAGGTATCGACTTCTACACCTCCATCACCCGTGC 5944798 Query 350086 TCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGT 350145 || || || || | || ||| || || | | || ||||| ||||| || || Sbjct 5944797 CCGTTTCGAGGAGCTTTGCCAGGACCTGTTCCGCTCCACCATGGAGCCTGTTGAGCGTGT 5944738 Query 350146 ATTAAAAGATGCAAAAAT-GTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTT 350204 | || || || || | | | || | | | || | || || || ||||||| Sbjct 5944737 CCTTCGTGACGCCAAGATCGACAAGTCCTCCG-TCCACGAGATCGTCTTGGTCGGTGGTT 5944679 Query 350205 CTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTT 350264 | || |||||||| || | || || | | || || || || || ||||| || || Sbjct 5944678 CCACCCGTATTCCCAAGATCCAGAAGCTTGTTTCCGACTTCTTCAACGGCAAGGAGCCCA 5944619 Query 350265 CTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTT 350324 || ||||| || || ||||| ||||| ||||| ||||| || || ||||| | || Sbjct 5944618 ACAGGTCAATCAACCCCGATGAGGCTGTCGCATACGGTGCCGCCGTCCAGGCCGCCATCC 5944559 Query 350325 TATCTGGAAATAAGAGTTCTAA---AATTGATGATCTATTACTACTAGATGTAACTCCAC 350381 | || || | | || || | | || | |||| || ||||| ||||| Sbjct 5944558 TCTCCGGTGACACCTCATCCAAGTCGACCAACGAAATCCTACTTCTCGATGTCTCTCCAT 5944499 Query 350382 TTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTA 350441 | || ||||| | || || |||||| || ||||| | || || | || | | Sbjct 5944498 TGTCCCTTGGTATCGAGACCGCTGGTGGTGTCATGACGGCACTCATCAAGCGGAACACCA 5944439 Query 350442 CTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAA 350501 | | || ||||| ||||| | || || ||||| | || || ||||| | || Sbjct 5944438 CCATCCCAACAAAGAAGTCTGAGGTGTTCTCGACATTCTCTGACAACCAGCCGGGAGTGT 5944379 Query 350502 CAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAAT 350561 || || || || || || || |||||||| || || || || || ||| || | | Sbjct 5944378 TGATCCAGGTCTTCGAGGGCGAGCGTGCTCGTACCAAGGACAACAACCTACTGGGCAAGT 5944319 Query 350562 TTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCG 350621 | || | || || ||||| || | || |||||||| ||||| || | |||| Sbjct 5944318 TCGAGCTTACTGGTATCCCACCCGCTCCACGTGGTGTTCCTCAAATTGAGGTTACCTTCG 5944259 Query 350622 ATATTGATTCAAATGGTAT 350640 || |||| | || ||||| Sbjct 5944258 ATCTTGACGCCAACGGTAT 5944240 >seq2 Length=7009248 Score = 156 bits (172), Expect = 1e-32 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| |||||||||| | || ||||| || || || |||||||| ||||| || ||||| Sbjct 3059406 CATTCCACCACGTAGACGAAGGACAAGGTGGAGGGTTGACTCTTTCTGAATGTTGTAATC 3059347 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||| | |||||| || || || || || ||||| || ||||| || ||||| || Sbjct 3059346 GGAAAGTGTCCTCCCATCCTCCAGCTGCTTGCCGGCAAATATGAGACGCTGTTGATCCGG 3059287 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || |||||||||||||| || || | || ||||| || || | || || | || Sbjct 3059286 TGGGATGCCTTCTTTATCCTGTATCTTCGACTTCACATTGTCGATGGTGTCTGACGACTC 3059227 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||||| || |||| ||||| || || ||||| || || || |||||||| Sbjct 3059226 AACTTCGAGGGTAATAGTCTTGCCAGTCAGTGTCTTGACGAAGATCTGCAT 3059176 Score = 122 bits (134), Expect = 3e-22 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||| ||||| | || || || | ||| || || ||| || || || || ||||| || Sbjct 3059859 ACCGCCACGAAGCCTAAGCACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAATCCGA 3059800 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 || ||||| ||||| || || || || |||||||| || | ||| ||||| || || || Sbjct 3059799 CAACGTTCGGCCATCCTCCAGCTGCTTCCCAGCAAAAATCAAACGCTGCTGGTCCGGCGG 3059740 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTA-CATTATCAATCGAATCAGATGGTTCAA 140688 || || ||||| ||||| || || ||| ||| | || ||||||| || || |||| Sbjct 3059739 GATACCCTCTTTGTCCTGGATCTT-GCTCTTAACGTTGTCAATCGTGTCGGAACTCTCAA 3059681 Query 140689 CTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||| | || | ||||||||||| || || || ||||| |||||||| Sbjct 3059680 CTTCCAAGGTGATCGTCTTTCCGGTAAGCGTCTTGACAAAGATCTGCAT 3059632 >seq7 Length=1695519 Score = 95.1 bits (104), Expect = 4e-14 Identities = 106/140 (76%), Gaps = 4/140 (3%) Strand=Plus/Plus Query 377450 CTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGA 377509 |||||| ||| || ||||| ||| |||||| || || | ||||||||||| |||| Sbjct 279086 CTTCAA-GCGGGGTACACCCAATGTGACATTC---TTCGAGGAGACACCAGCAAAATGGA 279141 Query 377510 AAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAA 377569 | || || ||||| | ||| |||| |||||||| ||||| || || || | || |||| Sbjct 279142 ACGTGTTCAGAGTCATTTGTGTAGCCGGCTCACCGATTGATTGTGCGGCTAGCACACCAA 279201 Query 377570 CCATTTCTCCAGGATTGACA 377589 |||| |||||||| || ||| Sbjct 279202 CCATCTCTCCAGGGTTCACA 279221 Score = 87.8 bits (96), Expect = 5e-12 Identities = 222/331 (67%), Gaps = 10/331 (3%) Strand=Plus/Plus Query 378121 TCAAATCCATCATCTCCATATGAGAATTGAACAATTTTATCTTTATTG---TTTCTTACA 378177 || || ||||| || || || |||||||||||| |||| | | || || || Sbjct 279771 TCTAAACCATCTTCACCGTAAATGAATTGAACAAT---ATCTCCAAGGGAGTTCCTAACT 279827 Query 378178 GTCATATCATATCTAACCATTAAATCTTCTAATGCTTTAA-TAAGTCGTCGAGAAATATA 378236 || ||| || | |||| | ||| || | ||||| | |||| || || |||||| Sbjct 279828 GTGCCATCGTACTTCGCCATGACATCCTCCAGCGCTTTGACTAAG-CGGCGTTGAATATA 279886 Query 378237 ACCAGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATG 378296 ||||||| || || || || ||||| || | ||| | || ||| |||| ||||| Sbjct 279887 GCCAGTTTCTGCCGTCTTCACCGCGGTATCGATGAGACCTTCTCGGCCAGCCATAGCATG 279946 Query 378297 GAAGAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGC 378356 |||||| ||||| || || || || || | | | ||| |||| | ||||||||| | Sbjct 279947 GAAGAAGAATTCCGTGGGCGTGAGGCCCCTTAGGTAGGAATTCTCGACAAATCCTCTCGA 280006 Query 378357 GCCTGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGAT-TCTCAAACCCATATG 378415 | || |||| |||| || || | ||||| | || |||| | | ||||| | | | Sbjct 280007 TTCCGGAGAATAGTCATCCTTGGTGAAGTGAGGCAGCGTTCGATATTTGAAACCGA-ACG 280065 Query 378416 GAATTCGTTTTCCATCAACATTCTGTTGACC 378446 |||| ||||| || || || |||||| || Sbjct 280066 GAATGCGTTTGCCCTCCACCGACTGTTGCCC 280096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515254264100621