Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq3 199 4e-46 >seq3 Length=5817774 Score = 199 bits (220), Expect = 4e-46 Identities = 413/611 (68%), Gaps = 4/611 (1%) Strand=Plus/Minus Query 19096 TGAGACGCCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCC 19155 ||||| ||||| || | | ||||| || || || ||||| ||||| || | Sbjct 3752128 TGAGAGACCTCAACACATGATAATGCGTGTTGCTGTTGGCATTTGGGGCGATGATATTGA 3752069 Query 19156 GCGAGTCCGCGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGAC 19215 | |||| |||||| || |||| ||| |||||||| |||||| ||||| |||| || Sbjct 3752068 GAAGGTCCTCGAGACCTATAACCTCATGTCCCAGAAGTACTTCACACACGCCTCGCCAAC 3752009 Query 19216 CCTTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAA 19275 || ||||| || ||||| | ||||||||| || |||||||| | | ||||| Sbjct 3752008 TCTCTTCAATGCTGGTACCCCGCAACCGCAGATGGCGTCTTGTTTCCTCATCGACATGAA 3751949 Query 19276 GGATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTG 19335 || |||||||||||||| || ||||| || | ||| || || || || ||| Sbjct 3751948 AGAGGACAGCATTGAGGGTATTTACGATACCTTGAAGACCTGTGCCTTGATTTCGAAGAC 3751889 Query 19336 GTCCGGGGGTATCGGGATCCAC-TGC-TCGAATATCCGGTCGAGTGGTACACGAATCAAT 19393 | | || || |||||| | || | | ||| |||| | | | || | || Sbjct 3751888 GGCGGGAGGCATCGGGCTGAACGTACATCG--TATCAGAGCCACCGGCTCTTACATTGCC 3751831 Query 19394 GGGACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCC 19453 || || || ||| || |||| ||||| || ||||||||||||||||| ||||| || Sbjct 3751830 GGCACAAATGGATCTTCCAACGGGATCGTGCCTATGCTCCGCGTCTTCAATAACACCGCA 3751771 Query 19454 AGGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCA 19513 || || ||| |||| || || ||| || || |||||||| ||||||| ||||| Sbjct 3751770 AGATATGTCGACCAAGGAGGTAACAAGCGGCCAGGTGCGTTCGCCGTCTACCTTGAGCCC 3751711 Query 19514 TGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATG 19573 |||||||| || ||| | || ||| | || ||||| ||| || || | ||||| | Sbjct 3751710 TGGCACGCCGATGTCTTCGAGTTCTTGGACTTGCGCAAGAATCACGGCAAGGAGGAAGTC 3751651 Query 19574 CGCTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAG 19633 ||| || ||||||||| || | |||| || || || |||||| || || ||| Sbjct 3751650 CGCGCCCGTGACCTCTTCTTAGCTCTTTGGACCCCAGATCTCTTCATGAAGCGTGTCGAG 3751591 Query 19634 AAGGACGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTAC 19693 ||| | | |||||| ||| | ||||| | ||| || ||||| | ||||| ||| Sbjct 3751590 AAGAATGCCGAATGGACGCTGTTTTGCCCCAATGAAGCTCCGGGCCTGGCTGACGTATAC 3751531 Query 19694 GGCGAGGCGTT 19704 || || | ||| Sbjct 3751530 GGTGACGAGTT 3751520 Score = 159 bits (176), Expect = 4e-34 Identities = 359/538 (67%), Gaps = 10/538 (2%) Strand=Plus/Plus Query 79306 TCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCG 79365 || || || || || | ||||||||| || | ||||| | ||| ||| || | Sbjct 3751526 TCACCGTATACGTCAGCCAGGCCCGGAGCTTCATTGGGGCAAAACAGCGTCCATTCGGCA 3751585 Query 79366 TCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGG 79425 | |||||| || || ||||||||| || ||| |||| || || ||||||||| ||| Sbjct 3751586 TTCTTCTCGACACGCTTCATGAAGAGATCTGGGGTCCAAAGAGCTAAGAAGAGGTCACGG 3751645 Query 79426 CAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCG 79485 || | ||||| | ||| || ||| |||| || | || || | || |||||| Sbjct 3751646 GCGCGGACTTCCTCCTTGCCGTGATTCTTGCGCAAGTCCAAGAACTCGAAGACATCGGCG 3751705 Query 79486 TGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACG 79545 ||||| ||||| || |||| |||||||| ||| |||||| || || |||| ||| Sbjct 3751706 TGCCAGGGCTCAAGGTAGACGGCGAACGCACCTGGCCGCTTGTTACCTCCTTGGTCGACA 3751765 Query 79546 TACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTC 79605 || | || ||||| ||||| || |||||||| |||||||| |||| || || || Sbjct 3751766 TATCTTGCGGTGTTATTGAAGACGCGGAGCATAGGCACGATCCCGTTGGAAGATCCATTT 3751825 Query 79606 GTCCCGTTGATTCGTGTACCGCTCGC-CCGA----ATGTTCGAGCAGTGGATTCCGATGC 79660 || ||| || | ||| | || | || |||| || ||| ||||||| Sbjct 3751826 GTGCCGGCAATGTAAGAGCCGGTGGCTCTGATACGATGTACGTTCAG-----CCCGATGC 3751880 Query 79661 CCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCG 79720 | || | | ||| || || || || ||| | || ||||| || ||||| || Sbjct 3751881 CTCCCGCCGTCTTCGAAATCAAGGCACAGGTCTTCAAGGTATCGTAAATACCCTCAATGC 3751940 Query 79721 AGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGT 79780 ||| || ||||| ||| ||||| || || |||||| || | ||||| || | Sbjct 3751941 TGTCCTCTTTCATGTCGATGAGGAAACAAGACGCCATCTGCGGTTGCGGGGTACCAGCAT 3752000 Query 79781 TGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTC 79838 ||||||| || |||| ||||| |||||| |||| ||| ||| || | || ||||| Sbjct 3752001 TGAAGAGAGTTGGCGAGGCGTGTGTGAAGTACTTCTGGGACATGAGGTTATAGGTCTC 3752058 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249 ||||| | |||||||| || |||||||||||| |||||| || | |||||| || Sbjct 3750340 GTTCGGAGGTAGTACATCCCAGTCTTGAGACCCAGCTTCCAGCCAGCAAAGTGCATGCTG 3750399 Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309 | | |||| ||| |||||| | | | ||| || || || || ||||| |||||| Sbjct 3750400 GTGATCTTGCCCATTGTCGGGTCTTTTAGGTGGATATTCAGAGATTGAGACTGATCGATG 3750459 Query 78310 TACGCACCGCGGTCGGCCGCCAT 78332 | |||||||||||||| ||||| Sbjct 3750460 AAAGCACCGCGGTCGGCAGCCAT 3750482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524752004080