Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq3 199 4e-46
>seq3
Length=5817774
Score = 199 bits (220), Expect = 4e-46
Identities = 413/611 (68%), Gaps = 4/611 (1%)
Strand=Plus/Minus
Query 19096 TGAGACGCCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCC 19155
||||| ||||| || | | ||||| || || || ||||| ||||| || |
Sbjct 3752128 TGAGAGACCTCAACACATGATAATGCGTGTTGCTGTTGGCATTTGGGGCGATGATATTGA 3752069
Query 19156 GCGAGTCCGCGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGAC 19215
| |||| |||||| || |||| ||| |||||||| |||||| ||||| |||| ||
Sbjct 3752068 GAAGGTCCTCGAGACCTATAACCTCATGTCCCAGAAGTACTTCACACACGCCTCGCCAAC 3752009
Query 19216 CCTTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAA 19275
|| ||||| || ||||| | ||||||||| || |||||||| | | |||||
Sbjct 3752008 TCTCTTCAATGCTGGTACCCCGCAACCGCAGATGGCGTCTTGTTTCCTCATCGACATGAA 3751949
Query 19276 GGATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTG 19335
|| |||||||||||||| || ||||| || | ||| || || || || |||
Sbjct 3751948 AGAGGACAGCATTGAGGGTATTTACGATACCTTGAAGACCTGTGCCTTGATTTCGAAGAC 3751889
Query 19336 GTCCGGGGGTATCGGGATCCAC-TGC-TCGAATATCCGGTCGAGTGGTACACGAATCAAT 19393
| | || || |||||| | || | | ||| |||| | | | || | ||
Sbjct 3751888 GGCGGGAGGCATCGGGCTGAACGTACATCG--TATCAGAGCCACCGGCTCTTACATTGCC 3751831
Query 19394 GGGACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCC 19453
|| || || ||| || |||| ||||| || ||||||||||||||||| ||||| ||
Sbjct 3751830 GGCACAAATGGATCTTCCAACGGGATCGTGCCTATGCTCCGCGTCTTCAATAACACCGCA 3751771
Query 19454 AGGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCA 19513
|| || ||| |||| || || ||| || || |||||||| ||||||| |||||
Sbjct 3751770 AGATATGTCGACCAAGGAGGTAACAAGCGGCCAGGTGCGTTCGCCGTCTACCTTGAGCCC 3751711
Query 19514 TGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATG 19573
|||||||| || ||| | || ||| | || ||||| ||| || || | ||||| |
Sbjct 3751710 TGGCACGCCGATGTCTTCGAGTTCTTGGACTTGCGCAAGAATCACGGCAAGGAGGAAGTC 3751651
Query 19574 CGCTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAG 19633
||| || ||||||||| || | |||| || || || |||||| || || |||
Sbjct 3751650 CGCGCCCGTGACCTCTTCTTAGCTCTTTGGACCCCAGATCTCTTCATGAAGCGTGTCGAG 3751591
Query 19634 AAGGACGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTAC 19693
||| | | |||||| ||| | ||||| | ||| || ||||| | ||||| |||
Sbjct 3751590 AAGAATGCCGAATGGACGCTGTTTTGCCCCAATGAAGCTCCGGGCCTGGCTGACGTATAC 3751531
Query 19694 GGCGAGGCGTT 19704
|| || | |||
Sbjct 3751530 GGTGACGAGTT 3751520
Score = 159 bits (176), Expect = 4e-34
Identities = 359/538 (67%), Gaps = 10/538 (2%)
Strand=Plus/Plus
Query 79306 TCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCG 79365
|| || || || || | ||||||||| || | ||||| | ||| ||| || |
Sbjct 3751526 TCACCGTATACGTCAGCCAGGCCCGGAGCTTCATTGGGGCAAAACAGCGTCCATTCGGCA 3751585
Query 79366 TCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGG 79425
| |||||| || || ||||||||| || ||| |||| || || ||||||||| |||
Sbjct 3751586 TTCTTCTCGACACGCTTCATGAAGAGATCTGGGGTCCAAAGAGCTAAGAAGAGGTCACGG 3751645
Query 79426 CAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCG 79485
|| | ||||| | ||| || ||| |||| || | || || | || ||||||
Sbjct 3751646 GCGCGGACTTCCTCCTTGCCGTGATTCTTGCGCAAGTCCAAGAACTCGAAGACATCGGCG 3751705
Query 79486 TGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACG 79545
||||| ||||| || |||| |||||||| ||| |||||| || || |||| |||
Sbjct 3751706 TGCCAGGGCTCAAGGTAGACGGCGAACGCACCTGGCCGCTTGTTACCTCCTTGGTCGACA 3751765
Query 79546 TACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTC 79605
|| | || ||||| ||||| || |||||||| |||||||| |||| || || ||
Sbjct 3751766 TATCTTGCGGTGTTATTGAAGACGCGGAGCATAGGCACGATCCCGTTGGAAGATCCATTT 3751825
Query 79606 GTCCCGTTGATTCGTGTACCGCTCGC-CCGA----ATGTTCGAGCAGTGGATTCCGATGC 79660
|| ||| || | ||| | || | || |||| || ||| |||||||
Sbjct 3751826 GTGCCGGCAATGTAAGAGCCGGTGGCTCTGATACGATGTACGTTCAG-----CCCGATGC 3751880
Query 79661 CCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCG 79720
| || | | ||| || || || || ||| | || ||||| || ||||| ||
Sbjct 3751881 CTCCCGCCGTCTTCGAAATCAAGGCACAGGTCTTCAAGGTATCGTAAATACCCTCAATGC 3751940
Query 79721 AGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGT 79780
||| || ||||| ||| ||||| || || |||||| || | ||||| || |
Sbjct 3751941 TGTCCTCTTTCATGTCGATGAGGAAACAAGACGCCATCTGCGGTTGCGGGGTACCAGCAT 3752000
Query 79781 TGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTC 79838
||||||| || |||| ||||| |||||| |||| ||| ||| || | || |||||
Sbjct 3752001 TGAAGAGAGTTGGCGAGGCGTGTGTGAAGTACTTCTGGGACATGAGGTTATAGGTCTC 3752058
Score = 87.8 bits (96), Expect = 2e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249
||||| | |||||||| || |||||||||||| |||||| || | |||||| ||
Sbjct 3750340 GTTCGGAGGTAGTACATCCCAGTCTTGAGACCCAGCTTCCAGCCAGCAAAGTGCATGCTG 3750399
Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309
| | |||| ||| |||||| | | | ||| || || || || ||||| ||||||
Sbjct 3750400 GTGATCTTGCCCATTGTCGGGTCTTTTAGGTGGATATTCAGAGATTGAGACTGATCGATG 3750459
Query 78310 TACGCACCGCGGTCGGCCGCCAT 78332
| |||||||||||||| |||||
Sbjct 3750460 AAAGCACCGCGGTCGGCAGCCAT 3750482
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548524752004080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |