Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq3 188 8e-43
seq1 86.0 7e-12
>seq3
Length=5817774
Score = 188 bits (208), Expect = 8e-43
Identities = 375/549 (68%), Gaps = 6/549 (1%)
Strand=Plus/Minus
Query 53237 GTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTG 53296
|||| ||||| || || | ||| ||| |||||||| || |||||| ||||||| ||
Sbjct 3752064 GTCCTCGAGACCTATAACCTCATGTCCCAGAAGTACTTCACACACGCCTCGCCAACTCTC 3752005
Query 53297 TTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGAT 53356
||||| |||||||| || || |||||| || || ||||| | | ||||| ||
Sbjct 3752004 TTCAATGCTGGTACCCCGCAACCGCAGATGGCGTCTTGTTTCCTCATCGACATGAAAGAG 3751945
Query 53357 GACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCG 53416
||| || || || || ||||| || | ||| |||||| || || ||| | ||
Sbjct 3751944 GACAGCATTGAGGGTATTTACGATACCTTGAAGACCTGTGCCTTGATTTCGAAGACGGCG 3751885
Query 53417 GGTGGTATCGGTATCCAC-TGC-TCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGA 53474
|| || ||||| | || | | ||| | || | || | |||| | || || |
Sbjct 3751884 GGAGGCATCGGGCTGAACGTACATCGTA--TCAGAGCCACCGGCTCTTACATTGCCGGCA 3751827
Query 53475 CGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGT 53534
| || || || | || |||||||||||||||||||||||||| ||||| || | |
Sbjct 3751826 CAAATGGATCTTCCAACGGGATCGTGCCTATGCTCCGCGTCTTCAATAACACCGCAAGAT 3751767
Query 53535 ACGTCAACCAGGGTGGTGGGAAGCG-CAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGG 53593
| ||| |||| || ||| ||||| | ||| | |||||||| ||||||| ||||| |||
Sbjct 3751766 ATGTCGACCAAGGAGGTAACAAGCGGCCAGGTG-CGTTCGCCGTCTACCTTGAGCCCTGG 3751708
Query 53594 CACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGC 53653
|||||||| | | ||||| | || |||| |||||| || | || || | |||
Sbjct 3751707 CACGCCGATGTCTTCGAGTTCTTGGACTTGCGCAAGAATCACGGCAAGGAGGAAGTCCGC 3751648
Query 53654 TGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAG 53713
||||||||| || |||||| |||| || || ||||||||| | || ||||||
Sbjct 3751647 GCCCGTGACCTCTTCTTAGCTCTTTGGACCCCAGATCTCTTCATGAAGCGTGTCGAGAAG 3751588
Query 53714 GACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGT 53773
| | || ||| ||| | ||||| || || || ||||| | || ||||||
Sbjct 3751587 AATGCCGAATGGACGCTGTTTTGCCCCAATGAAGCTCCGGGCCTGGCTGACGTATACGGT 3751528
Query 53774 GAGGAGTTT 53782
|| ||||||
Sbjct 3751527 GACGAGTTT 3751519
>seq1
Length=10671843
Score = 86.0 bits (94), Expect = 7e-12
Identities = 91/120 (76%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 74789 TTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACA 74848
||| || || || | || || |||||||| || |||||||| | ||| ||||||| |
Sbjct 3823220 TTCGTTTGAGAAGGTCAGACCCGGCATAAGACCGCGCTTCTTAAGCCAGAAGATGGAAGC 3823161
Query 74849 GAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908
||| ||||| || |||||||| || || ||| || ||||| ||||||||||| || ||
Sbjct 3823160 GAAAGAACCGCTAAAGAAGATACCCTCAACAGCAGCGAAGGCAACAAGGCGTTGAGCAAA 3823101
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547215952118600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |