Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3 188 8e-43 seq1 86.0 7e-12 >seq3 Length=5817774 Score = 188 bits (208), Expect = 8e-43 Identities = 375/549 (68%), Gaps = 6/549 (1%) Strand=Plus/Minus Query 53237 GTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTG 53296 |||| ||||| || || | ||| ||| |||||||| || |||||| ||||||| || Sbjct 3752064 GTCCTCGAGACCTATAACCTCATGTCCCAGAAGTACTTCACACACGCCTCGCCAACTCTC 3752005 Query 53297 TTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGAT 53356 ||||| |||||||| || || |||||| || || ||||| | | ||||| || Sbjct 3752004 TTCAATGCTGGTACCCCGCAACCGCAGATGGCGTCTTGTTTCCTCATCGACATGAAAGAG 3751945 Query 53357 GACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCG 53416 ||| || || || || ||||| || | ||| |||||| || || ||| | || Sbjct 3751944 GACAGCATTGAGGGTATTTACGATACCTTGAAGACCTGTGCCTTGATTTCGAAGACGGCG 3751885 Query 53417 GGTGGTATCGGTATCCAC-TGC-TCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGA 53474 || || ||||| | || | | ||| | || | || | |||| | || || | Sbjct 3751884 GGAGGCATCGGGCTGAACGTACATCGTA--TCAGAGCCACCGGCTCTTACATTGCCGGCA 3751827 Query 53475 CGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGT 53534 | || || || | || |||||||||||||||||||||||||| ||||| || | | Sbjct 3751826 CAAATGGATCTTCCAACGGGATCGTGCCTATGCTCCGCGTCTTCAATAACACCGCAAGAT 3751767 Query 53535 ACGTCAACCAGGGTGGTGGGAAGCG-CAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGG 53593 | ||| |||| || ||| ||||| | ||| | |||||||| ||||||| ||||| ||| Sbjct 3751766 ATGTCGACCAAGGAGGTAACAAGCGGCCAGGTG-CGTTCGCCGTCTACCTTGAGCCCTGG 3751708 Query 53594 CACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGC 53653 |||||||| | | ||||| | || |||| |||||| || | || || | ||| Sbjct 3751707 CACGCCGATGTCTTCGAGTTCTTGGACTTGCGCAAGAATCACGGCAAGGAGGAAGTCCGC 3751648 Query 53654 TGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAG 53713 ||||||||| || |||||| |||| || || ||||||||| | || |||||| Sbjct 3751647 GCCCGTGACCTCTTCTTAGCTCTTTGGACCCCAGATCTCTTCATGAAGCGTGTCGAGAAG 3751588 Query 53714 GACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGT 53773 | | || ||| ||| | ||||| || || || ||||| | || |||||| Sbjct 3751587 AATGCCGAATGGACGCTGTTTTGCCCCAATGAAGCTCCGGGCCTGGCTGACGTATACGGT 3751528 Query 53774 GAGGAGTTT 53782 || |||||| Sbjct 3751527 GACGAGTTT 3751519 >seq1 Length=10671843 Score = 86.0 bits (94), Expect = 7e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 74789 TTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACA 74848 ||| || || || | || || |||||||| || |||||||| | ||| ||||||| | Sbjct 3823220 TTCGTTTGAGAAGGTCAGACCCGGCATAAGACCGCGCTTCTTAAGCCAGAAGATGGAAGC 3823161 Query 74849 GAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908 ||| ||||| || |||||||| || || ||| || ||||| ||||||||||| || || Sbjct 3823160 GAAAGAACCGCTAAAGAAGATACCCTCAACAGCAGCGAAGGCAACAAGGCGTTGAGCAAA 3823101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215952118600