Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2 167 3e-36 seq6 104 3e-17 seq1 104 3e-17 >seq2 Length=7009248 Score = 167 bits (184), Expect = 3e-36 Identities = 167/217 (77%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 27416 TTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTG 27475 |||| |||||||| || || ||||| || || | ||||| || || |||| ||| | Sbjct 3058958 TTGTGAAGACGCTCACTGGAAAGACCATCACCTTGGAGGTGGAATCCTCGGATACCATCG 3059017 Query 27476 CAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAA 27535 ||| | |||||||| || |||||||||||||| ||||||||||| |||||||| | | Sbjct 3059018 ACAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCTCCAGATCAGCAGCGCTTGA 3059077 Query 27536 TTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGG 27595 | ||||| || ||||| || ||||||| ||||| || | ||||| || | ||||||| Sbjct 3059078 TCTTTGCCGGCAAGCAGCTTGAGGATGGACGTACTCTGTCTGACTACAACATTCAAAAGG 3059137 Query 27596 AATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||||||||| || ||| | ||||| || || || Sbjct 3059138 AATCCACTCTTCACCTCGTCCTTCGTCTCCGTGGCGG 3059174 Score = 141 bits (156), Expect = 1e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||||||||| || || |||||||| ||||| || | ||| | ||| | ||| | Sbjct 3058689 ACCGGCAAGACCATCACCCTTGAGGTGGAGTCTTCGGACACCATCGATAATGTCAAGTCC 3058748 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || |||||||||||||| || ||||| || || |||||||| | || || ||||| ||| Sbjct 3058749 AAGATTCAGGACAAGGAAGGCATTCCCCCGGATCAGCAGCGCTTGATCTTCGCTGGCAAG 3058808 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || ||||| || | ||||| ||| | ||||| || | || ||||| ||||||||||| Sbjct 3058809 CAGCTCGAAGACGGCCGTACTCTATCGGACTACAACATTCAGAAGGAGTCCACTCTTCAC 3058868 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 | ||| | ||||| ||||| || Sbjct 3058869 TTGGTCCTACGTCTCCGCGGAGG 3058891 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || |||||||||||||| || || |||||||| Sbjct 3059176 ATGCAGATCTTCGTCAAGACACTGACTGGCAAGACTATTACCCTCGAAGTTGAGTCGTCA 3059235 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| ||||| | || || ||||| || || || || || || || || Sbjct 3059236 GACACCATCGACAATGTGAAGTCGAAGATACAGGATAAAGAAGGCATCCCACCGGATCAA 3059295 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||| || ||||| || ||||||| | || || | || || || Sbjct 3059296 CAGCGTCTCATATTTGCCGGCAAGCAGCTGGAGGATGGGAGGACACTTTCCGATTACAAC 3059355 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | || || || || || || || || ||| | ||||| || |||||| Sbjct 3059356 ATTCAGAAAGAGTCAACCCTCCACCTTGTCCTTCGTCTACGTGGTGGA 3059403 Score = 125 bits (138), Expect = 8e-24 Identities = 168/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||||||||||||||||||||| ||||| || || | || |||||| || | Sbjct 3059632 ATGCAGATCTTTGTCAAGACGCTTACCGGAAAGACGATCACCTTGGAAGTTGAG--AGTT 3059689 Query 27466 --GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 || | |||| || | ||| || || |||||||| ||||| || || || |||| Sbjct 3059690 CCGACACGATTGACAACGTTAAGAGCAAGATCCAGGACAAAGAGGGTATCCCGCCGGACC 3059749 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583 |||||||| | ||||||||||| ||||| || ||||||| || || | | || || | Sbjct 3059750 AGCAGCGTTTGATTTTTGCTGGGAAGCAGCTGGAGGATGGCCGAACGTTGTCGGATTACA 3059809 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 | |||| ||||| ||| || ||| | || | | ||||| || || || Sbjct 3059810 ACATCCAGAAGGAGAGCACCCTGCATTTGGTGCTTAGGCTTCGTGGCGGTCA 3059861 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||||||||| || ||||| || || || || || || ||| Sbjct 3059403 AATGCAGATCTTCGTAAAGACGCTTACTGGGAAGACAATAACGCTGGAAGTCGAATCATC 3059462 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | || | ||| | || || || ||||| ||||| || || |||||||| Sbjct 3059463 AGACACAATCGACAACGTCAAGTCGAAGATCCAAGACAAAGAGGGTATCCCACCAGACCA 3059522 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||| | || || || || ||||| | || || | || || || || || || Sbjct 3059523 ACAGCGATTGATCTTCGCCGGCAAGCAGTTGGAAGACGGCCGGACACTGAGTGATTACAA 3059582 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||| || ||| | || | || | ||||| |||||||| Sbjct 3059583 CATCCAAAAAGAGAGCACATTGCACTTGGTTCTTCGTCTGCGCGGTGG 3059630 >seq6 Length=2243500 Score = 104 bits (114), Expect = 3e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558 |||||||| || || || || ||||| ||||| || || || ||||| ||||||||||| Sbjct 1182240 GACAAGGAAGGTATCCCACCCGACCAACAGCGCCTGATCTTCGCTGGCAAGCAACTCGAA 1182181 Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 |||| || ||||| | ||||| || |||| || || |||||||| || || || || Sbjct 1182180 GATGGCCGCACCCTCTCCGACTACAACATCCAGAAAGAGTCCACTCTCCACCTGGTGCTG 1182121 Query 27619 CGTCTTCGCGGTGGA 27633 ||||| || |||||| Sbjct 1182120 CGTCTGCGTGGTGGA 1182106 >seq1 Length=10671843 Score = 104 bits (114), Expect = 3e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| |||||||| || || || ||||| || || || ||||| || || | || | || Sbjct 8978420 CTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTCGAATCGAGCGACACAAT 8978361 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 | ||| | || | ||||| ||||||||||| || || || || ||||||||||| | Sbjct 8978360 CGACAATGTCAAATCCAAAATCCAGGACAAGGAAGGCATCCCACCGGACCAGCAGCGATT 8978301 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593 || ||||| || ||||| | ||||||| ||||| || | ||||| || |||| || Sbjct 8978300 GATCTTTGCGGGCAAGCAGTTGGAGGATGGCCGTACACTTTCCGACTACAACATCCAGAA 8978241 Query 27594 GG 27595 || Sbjct 8978240 GG 8978239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310350097840