Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq2 167 3e-36
seq6 104 3e-17
seq1 104 3e-17
>seq2
Length=7009248
Score = 167 bits (184), Expect = 3e-36
Identities = 167/217 (77%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 27416 TTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTG 27475
|||| |||||||| || || ||||| || || | ||||| || || |||| ||| |
Sbjct 3058958 TTGTGAAGACGCTCACTGGAAAGACCATCACCTTGGAGGTGGAATCCTCGGATACCATCG 3059017
Query 27476 CAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAA 27535
||| | |||||||| || |||||||||||||| ||||||||||| |||||||| | |
Sbjct 3059018 ACAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCTCCAGATCAGCAGCGCTTGA 3059077
Query 27536 TTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGG 27595
| ||||| || ||||| || ||||||| ||||| || | ||||| || | |||||||
Sbjct 3059078 TCTTTGCCGGCAAGCAGCTTGAGGATGGACGTACTCTGTCTGACTACAACATTCAAAAGG 3059137
Query 27596 AATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
||||||||||||| || ||| | ||||| || || ||
Sbjct 3059138 AATCCACTCTTCACCTCGTCCTTCGTCTCCGTGGCGG 3059174
Score = 141 bits (156), Expect = 1e-28
Identities = 153/203 (75%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
||||||||||| || || |||||||| ||||| || | ||| | ||| | ||| |
Sbjct 3058689 ACCGGCAAGACCATCACCCTTGAGGTGGAGTCTTCGGACACCATCGATAATGTCAAGTCC 3058748
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| |||||||||||||| || ||||| || || |||||||| | || || ||||| |||
Sbjct 3058749 AAGATTCAGGACAAGGAAGGCATTCCCCCGGATCAGCAGCGCTTGATCTTCGCTGGCAAG 3058808
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
|| ||||| || | ||||| ||| | ||||| || | || ||||| |||||||||||
Sbjct 3058809 CAGCTCGAAGACGGCCGTACTCTATCGGACTACAACATTCAGAAGGAGTCCACTCTTCAC 3058868
Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632
| ||| | ||||| ||||| ||
Sbjct 3058869 TTGGTCCTACGTCTCCGCGGAGG 3058891
Score = 132 bits (146), Expect = 5e-26
Identities = 166/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| || || |||||||||||||| || || ||||||||
Sbjct 3059176 ATGCAGATCTTCGTCAAGACACTGACTGGCAAGACTATTACCCTCGAAGTTGAGTCGTCA 3059235
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | ||| ||||| | || || ||||| || || || || || || || ||
Sbjct 3059236 GACACCATCGACAATGTGAAGTCGAAGATACAGGATAAAGAAGGCATCCCACCGGATCAA 3059295
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || ||||| || ||||| || ||||||| | || || | || || ||
Sbjct 3059296 CAGCGTCTCATATTTGCCGGCAAGCAGCTGGAGGATGGGAGGACACTTTCCGATTACAAC 3059355
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633
| || || || || || || || || ||| | ||||| || ||||||
Sbjct 3059356 ATTCAGAAAGAGTCAACCCTCCACCTTGTCCTTCGTCTACGTGGTGGA 3059403
Score = 125 bits (138), Expect = 8e-24
Identities = 168/232 (72%), Gaps = 4/232 (2%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||||||||||||||||||||| ||||| || || | || |||||| || |
Sbjct 3059632 ATGCAGATCTTTGTCAAGACGCTTACCGGAAAGACGATCACCTTGGAAGTTGAG--AGTT 3059689
Query 27466 --GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523
|| | |||| || | ||| || || |||||||| ||||| || || || ||||
Sbjct 3059690 CCGACACGATTGACAACGTTAAGAGCAAGATCCAGGACAAAGAGGGTATCCCGCCGGACC 3059749
Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583
|||||||| | ||||||||||| ||||| || ||||||| || || | | || || |
Sbjct 3059750 AGCAGCGTTTGATTTTTGCTGGGAAGCAGCTGGAGGATGGCCGAACGTTGTCGGATTACA 3059809
Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635
| |||| ||||| ||| || ||| | || | | ||||| || || ||
Sbjct 3059810 ACATCCAGAAGGAGAGCACCCTGCATTTGGTGCTTAGGCTTCGTGGCGGTCA 3059861
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| ||||| || ||||||||||| || ||||| || || || || || || |||
Sbjct 3059403 AATGCAGATCTTCGTAAAGACGCTTACTGGGAAGACAATAACGCTGGAAGTCGAATCATC 3059462
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | || | || | ||| | || || || ||||| ||||| || || ||||||||
Sbjct 3059463 AGACACAATCGACAACGTCAAGTCGAAGATCCAAGACAAAGAGGGTATCCCACCAGACCA 3059522
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
||||| | || || || || ||||| | || || | || || || || || ||
Sbjct 3059523 ACAGCGATTGATCTTCGCCGGCAAGCAGTTGGAAGACGGCCGGACACTGAGTGATTACAA 3059582
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
||||||| || ||| | || | || | ||||| ||||||||
Sbjct 3059583 CATCCAAAAAGAGAGCACATTGCACTTGGTTCTTCGTCTGCGCGGTGG 3059630
>seq6
Length=2243500
Score = 104 bits (114), Expect = 3e-17
Identities = 104/135 (77%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558
|||||||| || || || || ||||| ||||| || || || ||||| |||||||||||
Sbjct 1182240 GACAAGGAAGGTATCCCACCCGACCAACAGCGCCTGATCTTCGCTGGCAAGCAACTCGAA 1182181
Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618
|||| || ||||| | ||||| || |||| || || |||||||| || || || ||
Sbjct 1182180 GATGGCCGCACCCTCTCCGACTACAACATCCAGAAAGAGTCCACTCTCCACCTGGTGCTG 1182121
Query 27619 CGTCTTCGCGGTGGA 27633
||||| || ||||||
Sbjct 1182120 CGTCTGCGTGGTGGA 1182106
>seq1
Length=10671843
Score = 104 bits (114), Expect = 3e-17
Identities = 132/182 (73%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473
||| |||||||| || || || ||||| || || || ||||| || || | || | ||
Sbjct 8978420 CTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTCGAATCGAGCGACACAAT 8978361
Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533
| ||| | || | ||||| ||||||||||| || || || || ||||||||||| |
Sbjct 8978360 CGACAATGTCAAATCCAAAATCCAGGACAAGGAAGGCATCCCACCGGACCAGCAGCGATT 8978301
Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593
|| ||||| || ||||| | ||||||| ||||| || | ||||| || |||| ||
Sbjct 8978300 GATCTTTGCGGGCAAGCAGTTGGAGGATGGCCGTACACTTTCCGACTACAACATCCAGAA 8978241
Query 27594 GG 27595
||
Sbjct 8978240 GG 8978239
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570310350097840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |