Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq2 145 7e-30
>seq2
Length=7009248
Score = 145 bits (160), Expect = 7e-30
Identities = 170/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || || ||||| |||||| ||||||| || ||||| || ||||
Sbjct 3059176 ATGCAGATCTTCGTCAAGACACTGACTGGCAAGACTATTACCCTCGAAGTTGAGTCGTCA 3059235
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | || || || || || || ||||||||||| ||||| ||||||
Sbjct 3059236 GACACCATCGACAATGTGAAGTCGAAGATACAGGATAAAGAAGGCATCCCACCGGATCAA 3059295
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | |||| |||||||| || |||| || | ||| ||||||||||||||
Sbjct 3059296 CAGCGTCTCATATTTGCCGGCAAGCAGCTGGAGGATGGGAGGACACTTTCCGATTACAAC 3059355
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||||| || ||||| ||| | || | || | ||| | || ||||| ||
Sbjct 3059356 ATTCAGAAAGAGTCAACCCTCCACCTTGTCCTTCGTCTACGTGGTGGAAT 3059405
Score = 136 bits (150), Expect = 3e-27
Identities = 168/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || ||||| || || || || ||| | || || || ||||| ||| | ||
Sbjct 3059404 ATGCAGATCTTCGTAAAGACGCTTACTGGGAAGACAATAACGCTGGAAGTCGAATCATCA 3059463
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | ||||| || || ||||||||||| || || ||||| || |||
Sbjct 3059464 GACACAATCGACAACGTCAAGTCGAAGATCCAAGACAAAGAGGGTATCCCACCAGACCAA 3059523
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| || || | ||||||||| || ||||||||| | ||| | |||||||||
Sbjct 3059524 CAGCGATTGATCTTCGCCGGCAAGCAGTTGGAAGACGGCCGGACACTGAGTGATTACAAC 3059583
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| ||||| ||| || || || |||||| | ||| |||| ||||| ||
Sbjct 3059584 ATCCAAAAAGAGAGCACATTGCACTTGGTTCTTCGTCTGCGCGGTGGTAT 3059633
Score = 111 bits (122), Expect = 1e-19
Identities = 148/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAA 27071
||||||||| | || || ||||| ||||| | || ||| | || || | |||||
Sbjct 3058689 ACCGGCAAGACCATCACCCTTGAGGTGGAGTCTTCGGACACCATCGATAATGTCAAGTCC 3058748
Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131
|| ||||| ||||| |||||||| || || ||||| ||||| || || | ||| |||||
Sbjct 3058749 AAGATTCAGGACAAGGAAGGCATTCCCCCGGATCAGCAGCGCTTGATCTTCGCTGGCAAG 3058808
Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191
|| | |||||| | || | || || ||||||||||| |||||||| || | ||
Sbjct 3058809 CAGCTCGAAGACGGCCGTACTCTATCGGACTACAACATTCAGAAGGAGTCCACTCTTCAC 3058868
Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||||| | ||| | || || |||||
Sbjct 3058869 TTGGTCCTACGTCTCCGCGGAGGCAT 3058894
Score = 102 bits (112), Expect = 7e-17
Identities = 150/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| || || || ||||| ||| | || || | ||||| || |||
Sbjct 3059632 ATGCAGATCTTTGTCAAGACGCTTACCGGAAAGACGATCACCTTGGAAGTTGAGAGTTCC 3059691
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| ||||||| | || || || || || |||||||| || || || || || ||
Sbjct 3059692 GACACGATTGACAACGTTAAGAGCAAGATCCAGGACAAAGAGGGTATCCCGCCGGACCAG 3059751
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166
|||||||| || | || || || || |||| || | ||| |||| || ||||||||
Sbjct 3059752 CAGCGTTTGATTTTTGCTGGGAAGCAGCTGGAGGATGGC-CGAACGTTGTCGGATTACAA 3059810
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGT 27196
||| || |||||| ||| | ||||||||
Sbjct 3059811 CATCCAGAAGGAGAGCACCCTGCATTTGGT 3059840
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434918361944640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |