Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq2 145 7e-30 >seq2 Length=7009248 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| ||||||| || ||||| || |||| Sbjct 3059176 ATGCAGATCTTCGTCAAGACACTGACTGGCAAGACTATTACCCTCGAAGTTGAGTCGTCA 3059235 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || || ||||||||||| ||||| |||||| Sbjct 3059236 GACACCATCGACAATGTGAAGTCGAAGATACAGGATAAAGAAGGCATCCCACCGGATCAA 3059295 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | |||| |||||||| || |||| || | ||| |||||||||||||| Sbjct 3059296 CAGCGTCTCATATTTGCCGGCAAGCAGCTGGAGGATGGGAGGACACTTTCCGATTACAAC 3059355 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || ||||| ||| | || | || | ||| | || ||||| || Sbjct 3059356 ATTCAGAAAGAGTCAACCCTCCACCTTGTCCTTCGTCTACGTGGTGGAAT 3059405 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || ||||| || || || || ||| | || || || ||||| ||| | || Sbjct 3059404 ATGCAGATCTTCGTAAAGACGCTTACTGGGAAGACAATAACGCTGGAAGTCGAATCATCA 3059463 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || ||||||||||| || || ||||| || ||| Sbjct 3059464 GACACAATCGACAACGTCAAGTCGAAGATCCAAGACAAAGAGGGTATCCCACCAGACCAA 3059523 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | ||||||||| || ||||||||| | ||| | ||||||||| Sbjct 3059524 CAGCGATTGATCTTCGCCGGCAAGCAGTTGGAAGACGGCCGGACACTGAGTGATTACAAC 3059583 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||| ||| || || || |||||| | ||| |||| ||||| || Sbjct 3059584 ATCCAAAAAGAGAGCACATTGCACTTGGTTCTTCGTCTGCGCGGTGGTAT 3059633 Score = 111 bits (122), Expect = 1e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAA 27071 ||||||||| | || || ||||| ||||| | || ||| | || || | ||||| Sbjct 3058689 ACCGGCAAGACCATCACCCTTGAGGTGGAGTCTTCGGACACCATCGATAATGTCAAGTCC 3058748 Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || ||||| ||||| |||||||| || || ||||| ||||| || || | ||| ||||| Sbjct 3058749 AAGATTCAGGACAAGGAAGGCATTCCCCCGGATCAGCAGCGCTTGATCTTCGCTGGCAAG 3058808 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 || | |||||| | || | || || ||||||||||| |||||||| || | || Sbjct 3058809 CAGCTCGAAGACGGCCGTACTCTATCGGACTACAACATTCAGAAGGAGTCCACTCTTCAC 3058868 Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| | ||| | || || ||||| Sbjct 3058869 TTGGTCCTACGTCTCCGCGGAGGCAT 3058894 Score = 102 bits (112), Expect = 7e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || ||||| ||| | || || | ||||| || ||| Sbjct 3059632 ATGCAGATCTTTGTCAAGACGCTTACCGGAAAGACGATCACCTTGGAAGTTGAGAGTTCC 3059691 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||| | || || || || || |||||||| || || || || || || Sbjct 3059692 GACACGATTGACAACGTTAAGAGCAAGATCCAGGACAAAGAGGGTATCCCGCCGGACCAG 3059751 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 |||||||| || | || || || || |||| || | ||| |||| || |||||||| Sbjct 3059752 CAGCGTTTGATTTTTGCTGGGAAGCAGCTGGAGGATGGC-CGAACGTTGTCGGATTACAA 3059810 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGT 27196 ||| || |||||| ||| | |||||||| Sbjct 3059811 CATCCAGAAGGAGAGCACCCTGCATTTGGT 3059840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434918361944640