Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq2 96.9 2e-15 >seq2 Length=7009248 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| || || ||||| || || || || | || || || || || Sbjct 3059632 ATGCAGATCTTTGTCAAGACGCTTACCGGAAAGACGATCACCTTGGAAGTTGAGAGTTCC 3059691 Query 27850 GAC--GATGTACAATCGGTCAAA-CAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| ||| |||| || | | | ||| | || |||||||| ||| | ||| ||| Sbjct 3059692 GACACGATTGACAA-CGTTAAGAGCAAGATCCAG--GACAAAGAGGGTATCCCGCCGGAC 3059748 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| || || |||||||| || || || |||| || | || | ||||| |||||| Sbjct 3059749 CAGCAGCGTTTGATTTTTGCTGGGAAGCAGCTGGAGGATGGCCGAACGTTGTCGGATTAC 3059808 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || |||||||| |||||||||| | | | |||||||| Sbjct 3059809 AACATCCAGAAGGAGAGCACCCTGCATTTGGTGCTTAGGCTTCGTGGCGG 3059858 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGC 27846 |||||| || || || || || ||||||||||| || || | || |||||| | | Sbjct 3059403 AATGCAGATCTTCGTAAAGACGCTTACTGGGAAGACAATAACGCTGGAAGTCGAATCATC 3059462 Query 27847 ACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || |||| ||||| || || |||||||| ||| | || || Sbjct 3059463 AGACACAATCGACAAC--GTCAAGTCGAAGATCCAAGACAAAGAGGGTATCCCACCAGAC 3059520 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || || || || || || ||||| || || ||||| |||| || | || |||||| Sbjct 3059521 CAACAGCGATTGATCTTCGCCGGCAAGCAGTTGGAAGACGGCCGGACACTGAGTGATTAC 3059580 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||||||||||||| ||||| |||||| | ||| |||| || || Sbjct 3059581 AACATCCAAAAAGAGAGCACATTGCACTTGGTTCTTCGTCTGCGCGGTGG 3059630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355862369640489