Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq2 96.9 2e-15
>seq2
Length=7009248
Score = 96.9 bits (106), Expect = 2e-15
Identities = 162/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| || ||||| || || ||||| || || || || | || || || || ||
Sbjct 3059632 ATGCAGATCTTTGTCAAGACGCTTACCGGAAAGACGATCACCTTGGAAGTTGAGAGTTCC 3059691
Query 27850 GAC--GATGTACAATCGGTCAAA-CAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906
||| ||| |||| || | | | ||| | || |||||||| ||| | ||| |||
Sbjct 3059692 GACACGATTGACAA-CGTTAAGAGCAAGATCCAG--GACAAAGAGGGTATCCCGCCGGAC 3059748
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966
||||| || || |||||||| || || || |||| || | || | ||||| ||||||
Sbjct 3059749 CAGCAGCGTTTGATTTTTGCTGGGAAGCAGCTGGAGGATGGCCGAACGTTGTCGGATTAC 3059808
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|||||||| || |||||||| |||||||||| | | | ||||||||
Sbjct 3059809 AACATCCAGAAGGAGAGCACCCTGCATTTGGTGCTTAGGCTTCGTGGCGG 3059858
Score = 95.1 bits (104), Expect = 9e-15
Identities = 160/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGC 27846
|||||| || || || || || ||||||||||| || || | || |||||| | |
Sbjct 3059403 AATGCAGATCTTCGTAAAGACGCTTACTGGGAAGACAATAACGCTGGAAGTCGAATCATC 3059462
Query 27847 ACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906
| || || |||| ||||| || || |||||||| ||| | || ||
Sbjct 3059463 AGACACAATCGACAAC--GTCAAGTCGAAGATCCAAGACAAAGAGGGTATCCCACCAGAC 3059520
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966
|| || || || || || ||||| || || ||||| |||| || | || ||||||
Sbjct 3059521 CAACAGCGATTGATCTTCGCCGGCAAGCAGTTGGAAGACGGCCGGACACTGAGTGATTAC 3059580
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|||||||||||||||||||| ||||| |||||| | ||| |||| || ||
Sbjct 3059581 AACATCCAAAAAGAGAGCACATTGCACTTGGTTCTTCGTCTGCGCGGTGG 3059630
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355862369640489
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |