Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq2 167 5e-36
seq1 127 5e-24
seq6 116 9e-21
>seq2
Length=7009248
Score = 167 bits (184), Expect = 5e-36
Identities = 158/202 (78%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| |||||||||||||| || ||||| ||||| || || | || || | ||||||
Sbjct 3059159 AGGACGAGGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCAGACAGAGTACGTCCATCC 3059100
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| || ||||| | ||| || || || ||||||| || |||||||||
Sbjct 3059099 TCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGATCTGGAGGAATGCCCTCCTTGTCC 3059040
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || || || |||||||| || ||| ||| ||||| | ||||| |||
Sbjct 3059039 TGGATCTTAGCCTTGACATTGTCGATGGTATCCGAGGATTCCACCTCCAAGGTGATGGTC 3058980
Query 211083 TTTCCCGTGAGAGTCTTTACAA 211104
||||| ||||| ||||| ||||
Sbjct 3058979 TTTCCAGTGAGCGTCTTCACAA 3058958
Score = 161 bits (178), Expect = 2e-34
Identities = 163/212 (77%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||||||||| || || |||||||| || ||||| ||||| | ||| ||||| |||||
Sbjct 3059387 AGGACAAGGTGGAGGGTTGACTCTTTCTGAATGTTGTAATCGGAAAGTGTCCTCCCATCC 3059328
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||||||||| || || || || || ||||| || || || | ||||| || |||
Sbjct 3059327 TCCAGCTGCTTGCCGGCAAATATGAGACGCTGTTGATCCGGTGGGATGCCTTCTTTATCC 3059268
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| ||||| || ||||||||||| || ||||| ||||| || || |||
Sbjct 3059267 TGTATCTTCGACTTCACATTGTCGATGGTGTCTGACGACTCAACTTCGAGGGTAATAGTC 3059208
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || || ||||| || || | ||||||
Sbjct 3059207 TTGCCAGTCAGTGTCTTGACGAAGATCTGCAT 3059176
Score = 147 bits (162), Expect = 5e-30
Identities = 152/199 (76%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
|| || | |||||| | ||||||||||||||| || || ||||| || |||| || ||
Sbjct 3058885 CGGAGACGTAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGATAGAGTA 3058826
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
| || ||||| ||||||||||| |||||||| | ||| || || || || |||| |||
Sbjct 3058825 CGGCCGTCTTCGAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGATCCGGGGGAATGCCT 3058766
Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073
||||||||||| ||||| || || || ||||||||||| || || ||||| ||
Sbjct 3058765 TCCTTGTCCTGAATCTTGGACTTGACATTATCGATGGTGTCCGAAGACTCCACCTCAAGG 3058706
Query 211074 GTGATCGTCTTTCCCGTGA 211092
||||| ||||| || ||||
Sbjct 3058705 GTGATGGTCTTGCCGGTGA 3058687
Score = 140 bits (154), Expect = 8e-28
Identities = 164/222 (74%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| || || || | || || ||| ||| || |||||||| ||||||| | ||
Sbjct 3059853 ACGAAGCCTAAGCACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAATCCGACAACGT 3059794
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| ||||| ||||||||||| || || || || | || || ||||| || || | ||
Sbjct 3059793 TCGGCCATCCTCCAGCTGCTTCCCAGCAAAAATCAAACGCTGCTGGTCCGGCGGGATACC 3059734
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
|| |||||||||||||| || ||||| || || ||||| || || ||||| || |
Sbjct 3059733 CTCTTTGTCCTGGATCTTGCTCTTAACGTTGTCAATCGTGTCGGAACTCTCAACTTCCAA 3059674
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|||||||||||||| || || ||||| ||||| | ||||||
Sbjct 3059673 GGTGATCGTCTTTCCGGTAAGCGTCTTGACAAAGATCTGCAT 3059632
Score = 136 bits (150), Expect = 9e-27
Identities = 146/193 (76%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 210923 CTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAA 210982
||||||||||||||| ||||| || |||| || ||||||| ||||||||| |||||
Sbjct 3059595 CTCTTTTTGGATGTTGTAATCACTCAGTGTCCGGCCGTCTTCCAACTGCTTGCCGGCGAA 3059536
Query 210983 GATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTT 211042
||| | || |||||||| || || | || || ||||| |||||||| || |||||
Sbjct 3059535 GATCAATCGCTGTTGGTCTGGTGGGATACCCTCTTTGTCTTGGATCTTCGACTTGACGTT 3059476
Query 211043 TTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102
||||| ||||| || ||| || || || || || ||||| || || || ||||||||
Sbjct 3059475 GTCGATTGTGTCTGATGATTCGACTTCCAGCGTTATTGTCTTCCCAGTAAGCGTCTTTAC 3059416
Query 211103 AAACACCTGCATT 211115
|| | |||||||
Sbjct 3059415 GAAGATCTGCATT 3059403
>seq1
Length=10671843
Score = 127 bits (140), Expect = 5e-24
Identities = 138/182 (76%), Gaps = 6/182 (3%)
Strand=Plus/Plus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
|| |||||||| || || | ||| || | ||||| |||| ||||||||| || |||||
Sbjct 8978241 TTCTGGATGTTGTAGTCGGAAAGTGTACGGCCATCCTCCAACTGCTTGCCCGCAAAGATC 8978300
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
| || || ||||| || || | ||||||||||||||||| || ||| || || |||
Sbjct 8978301 AATCGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATTTTGGATTTGACATTGTCG 8978360
Query 211047 ATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACA 211103
|| ||||| ||| ||| |||||||| ||||| ||||| |||||||| ||||| ||
Sbjct 8978361 ATTGTGTC---GCTCGATTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGACG 8978417
Query 211104 AA 211105
||
Sbjct 8978418 AA 8978419
>seq6
Length=2243500
Score = 116 bits (128), Expect = 9e-21
Identities = 97/119 (82%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||||| |||||||||||||| |||||||| || || | ||||| | ||||||
Sbjct 1182122 AGCACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 1182181
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021
|| || |||||||| |||||||| ||||| |||||||| || || | |||||||||||
Sbjct 1182182 TCGAGTTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCGGGTGGGATACCTTCCTTGTC 1182240
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159151896038555
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |