Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2 167 5e-36 seq1 127 5e-24 seq6 116 9e-21 >seq2 Length=7009248 Score = 167 bits (184), Expect = 5e-36 Identities = 158/202 (78%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| |||||||||||||| || ||||| ||||| || || | || || | |||||| Sbjct 3059159 AGGACGAGGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCAGACAGAGTACGTCCATCC 3059100 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| | ||| || || || ||||||| || ||||||||| Sbjct 3059099 TCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGATCTGGAGGAATGCCCTCCTTGTCC 3059040 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || |||||||| || ||| ||| ||||| | ||||| ||| Sbjct 3059039 TGGATCTTAGCCTTGACATTGTCGATGGTATCCGAGGATTCCACCTCCAAGGTGATGGTC 3058980 Query 211083 TTTCCCGTGAGAGTCTTTACAA 211104 ||||| ||||| ||||| |||| Sbjct 3058979 TTTCCAGTGAGCGTCTTCACAA 3058958 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || || |||||||| || ||||| ||||| | ||| ||||| ||||| Sbjct 3059387 AGGACAAGGTGGAGGGTTGACTCTTTCTGAATGTTGTAATCGGAAAGTGTCCTCCCATCC 3059328 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || || || || || ||||| || || || | ||||| || ||| Sbjct 3059327 TCCAGCTGCTTGCCGGCAAATATGAGACGCTGTTGATCCGGTGGGATGCCTTCTTTATCC 3059268 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||||| || ||||||||||| || ||||| ||||| || || ||| Sbjct 3059267 TGTATCTTCGACTTCACATTGTCGATGGTGTCTGACGACTCAACTTCGAGGGTAATAGTC 3059208 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 3059207 TTGCCAGTCAGTGTCTTGACGAAGATCTGCAT 3059176 Score = 147 bits (162), Expect = 5e-30 Identities = 152/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || || | |||||| | ||||||||||||||| || || ||||| || |||| || || Sbjct 3058885 CGGAGACGTAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGATAGAGTA 3058826 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || ||||| ||||||||||| |||||||| | ||| || || || || |||| ||| Sbjct 3058825 CGGCCGTCTTCGAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGATCCGGGGGAATGCCT 3058766 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||| ||||| || || || ||||||||||| || || ||||| || Sbjct 3058765 TCCTTGTCCTGAATCTTGGACTTGACATTATCGATGGTGTCCGAAGACTCCACCTCAAGG 3058706 Query 211074 GTGATCGTCTTTCCCGTGA 211092 ||||| ||||| || |||| Sbjct 3058705 GTGATGGTCTTGCCGGTGA 3058687 Score = 140 bits (154), Expect = 8e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| || || || | || || ||| ||| || |||||||| ||||||| | || Sbjct 3059853 ACGAAGCCTAAGCACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAATCCGACAACGT 3059794 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| ||||||||||| || || || || | || || ||||| || || | || Sbjct 3059793 TCGGCCATCCTCCAGCTGCTTCCCAGCAAAAATCAAACGCTGCTGGTCCGGCGGGATACC 3059734 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 || |||||||||||||| || ||||| || || ||||| || || ||||| || | Sbjct 3059733 CTCTTTGTCCTGGATCTTGCTCTTAACGTTGTCAATCGTGTCGGAACTCTCAACTTCCAA 3059674 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||||||||| || || ||||| ||||| | |||||| Sbjct 3059673 GGTGATCGTCTTTCCGGTAAGCGTCTTGACAAAGATCTGCAT 3059632 Score = 136 bits (150), Expect = 9e-27 Identities = 146/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 210923 CTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAA 210982 ||||||||||||||| ||||| || |||| || ||||||| ||||||||| ||||| Sbjct 3059595 CTCTTTTTGGATGTTGTAATCACTCAGTGTCCGGCCGTCTTCCAACTGCTTGCCGGCGAA 3059536 Query 210983 GATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTT 211042 ||| | || |||||||| || || | || || ||||| |||||||| || ||||| Sbjct 3059535 GATCAATCGCTGTTGGTCTGGTGGGATACCCTCTTTGTCTTGGATCTTCGACTTGACGTT 3059476 Query 211043 TTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102 ||||| ||||| || ||| || || || || || ||||| || || || |||||||| Sbjct 3059475 GTCGATTGTGTCTGATGATTCGACTTCCAGCGTTATTGTCTTCCCAGTAAGCGTCTTTAC 3059416 Query 211103 AAACACCTGCATT 211115 || | ||||||| Sbjct 3059415 GAAGATCTGCATT 3059403 >seq1 Length=10671843 Score = 127 bits (140), Expect = 5e-24 Identities = 138/182 (76%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | ||| || | ||||| |||| ||||||||| || ||||| Sbjct 8978241 TTCTGGATGTTGTAGTCGGAAAGTGTACGGCCATCCTCCAACTGCTTGCCCGCAAAGATC 8978300 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | || || ||||| || || | ||||||||||||||||| || ||| || || ||| Sbjct 8978301 AATCGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATTTTGGATTTGACATTGTCG 8978360 Query 211047 ATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACA 211103 || ||||| ||| ||| |||||||| ||||| ||||| |||||||| ||||| || Sbjct 8978361 ATTGTGTC---GCTCGATTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGACG 8978417 Query 211104 AA 211105 || Sbjct 8978418 AA 8978419 >seq6 Length=2243500 Score = 116 bits (128), Expect = 9e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| |||||||||||||| |||||||| || || | ||||| | |||||| Sbjct 1182122 AGCACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 1182181 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 || || |||||||| |||||||| ||||| |||||||| || || | ||||||||||| Sbjct 1182182 TCGAGTTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCGGGTGGGATACCTTCCTTGTC 1182240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151896038555