Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq2 105 6e-18
>seq2
Length=7009248
Score = 105 bits (116), Expect = 6e-18
Identities = 159/221 (72%), Gaps = 5/221 (2%)
Strand=Plus/Minus
Query 39067 AAGCGTAA-CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCG 39125
|||| ||| ||||||||| || |||||||| || || || || ||||| | | |||||
Sbjct 3059850 AAGCCTAAGCACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAATCCGACAACGTTCG 3059791
Query 39126 TTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTC 39185
| || || ||||| || || ||||| || | |||||||||||| | || | | |||
Sbjct 3059790 GCCATCCTCCAGCTGCTTCCCAGCAAAAATCAAACGCTGCTGGTCCGGCGGGATACCCTC 3059731
Query 39186 TTTGTCCATGAT-TTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACC 39243
||||||| ||| || || || | ||| | | | ||| ||| ||| || ||||
Sbjct 3059730 TTTGTCCTGGATCTTGCTCTT--AACGTTGTCAATCGTGTCGGAACTCTCAACTTCCAAG 3059673
Query 39244 GTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
||||| | ||||| || ||||| || |||||||| |||||
Sbjct 3059672 GTGATCGTCTTTCCGGTAAGCGTCTTGACAAAGATCTGCAT 3059632
Score = 82.4 bits (90), Expect = 7e-11
Identities = 148/211 (70%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135
||||| || | |||||||||||||| || || ||||| ||||| || |||| ||
Sbjct 3059612 ACCAAGTGCAATGTGCTCTCTTTTTGGATGTTGTAATCACTCAGTGTCCGGCCGTCTTCC 3059553
Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCAT 39194
| ||| ||||| || || || | ||||| ||||| |||||| | | |||||||||
Sbjct 3059552 AACTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGG-ATACCCTCTTTGTCTTG 3059494
Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253
||| ||| |||| ||| | | | || || || || || |||| ||| || | |
Sbjct 3059493 GATCTTCGACTTGA-CGTTGTCGATTGTGTCTGATGATTCGACTTCCAGCGTTATTGTCT 3059435
Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| || || ||||| || || ||||| |||||
Sbjct 3059434 TCCCAGTAAGCGTCTTTACGAAGATCTGCAT 3059404
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429545563354391
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |