Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq2 105 6e-18 >seq2 Length=7009248 Score = 105 bits (116), Expect = 6e-18 Identities = 159/221 (72%), Gaps = 5/221 (2%) Strand=Plus/Minus Query 39067 AAGCGTAA-CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCG 39125 |||| ||| ||||||||| || |||||||| || || || || ||||| | | ||||| Sbjct 3059850 AAGCCTAAGCACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAATCCGACAACGTTCG 3059791 Query 39126 TTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTC 39185 | || || ||||| || || ||||| || | |||||||||||| | || | | ||| Sbjct 3059790 GCCATCCTCCAGCTGCTTCCCAGCAAAAATCAAACGCTGCTGGTCCGGCGGGATACCCTC 3059731 Query 39186 TTTGTCCATGAT-TTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACC 39243 ||||||| ||| || || || | ||| | | | ||| ||| ||| || |||| Sbjct 3059730 TTTGTCCTGGATCTTGCTCTT--AACGTTGTCAATCGTGTCGGAACTCTCAACTTCCAAG 3059673 Query 39244 GTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||| | ||||| || ||||| || |||||||| ||||| Sbjct 3059672 GTGATCGTCTTTCCGGTAAGCGTCTTGACAAAGATCTGCAT 3059632 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || | |||||||||||||| || || ||||| ||||| || |||| || Sbjct 3059612 ACCAAGTGCAATGTGCTCTCTTTTTGGATGTTGTAATCACTCAGTGTCCGGCCGTCTTCC 3059553 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCAT 39194 | ||| ||||| || || || | ||||| ||||| |||||| | | ||||||||| Sbjct 3059552 AACTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGG-ATACCCTCTTTGTCTTG 3059494 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| ||| |||| ||| | | | || || || || || |||| ||| || | | Sbjct 3059493 GATCTTCGACTTGA-CGTTGTCGATTGTGTCTGATGATTCGACTTCCAGCGTTATTGTCT 3059435 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || ||||| || || ||||| ||||| Sbjct 3059434 TCCCAGTAAGCGTCTTTACGAAGATCTGCAT 3059404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429545563354391