Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2 111 1e-19 seq1 82.4 5e-11 >seq2 Length=7009248 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || || || || || || || || || || ||||| || || | Sbjct 3059403 AATGCAGATCTTCGTAAAGACGCTTACTGGGAAGACAATAACGCTGGAAGTCGAATCATC 3059462 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || | | || || || |||||||| ||| | || ||||| || Sbjct 3059463 AGACACAATCGACAACGTCAAGTCGAAGATCCAAGACAAAGAGGGTATCCCACCAGACCA 3059522 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| || || || |||||||| || ||||||||| || || | | |||||||| Sbjct 3059523 ACAGCGATTGATCTTCGCCGGCAAGCAGTTGGAAGACGGCCGGACACTGAGTGATTACAA 3059582 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| ||||||||| |||||| || || ||| Sbjct 3059583 CATCCAAAAAGAGAGCACATTGCACTTGGTT 3059613 Score = 109 bits (120), Expect = 4e-19 Identities = 147/200 (74%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || || || || || || || || ||||||||||| || | Sbjct 3059176 ATGCAGATCTTCGTCAAGACACTGACTGGCAAGACTATTACCCTCGAAGTTGAGTCGTCA 3059235 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | || |||||||| | || || ||||| Sbjct 3059236 GACACCATCGACAATGTGAAGTCGAAGA-TACAGGATAAAGAAGGCATCCCACCGGATCA 3059294 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGA--CGAACGCACTTTAGGCGATTAC 23787 ||||||| | |||||||||||||| || ||||| || || |||||| ||||||| Sbjct 3059295 ACAGCGTCTCATATTTGCCGGCAAGCAGCTGGAGGATGGGAGGACACTTT--CCGATTAC 3059352 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || |||||||| || Sbjct 3059353 AACATTCAGAAAGAGTCAAC 3059372 Score = 95.1 bits (104), Expect = 8e-15 Identities = 165/236 (70%), Gaps = 3/236 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || || || ||||| |||||||| | |||||||| | Sbjct 3059632 ATGCAGATCTTTGTCAAGACGCTTACCGGAAAGACGATCACCTTGGAAGTTGAGAGTTCC 3059691 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| || |||| | || | | |||||||| ||| | ||||| || || Sbjct 3059692 GACACGATTGACAACGTTAAGAGCAAGA-TCCAGGACAAAGAGGGTATCCCGCCGGACCA 3059750 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||||| || ||||| || || || ||||| || | || || || |||||||| Sbjct 3059751 GCAGCGTTTGATTTTTGCTGGGAAGCAGCTGGAGGATGGCCGAACGTTGTCGGATTACAA 3059810 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGATCAGCAG 23845 ||| || || ||| ||| | ||||| || | ||| | || || || |||| || Sbjct 3059811 CATCCAGAAGGAGAGCACCCTGCATTTGGTGCTTAGGCTTCGTGGCGG-TCAGTAG 3059865 >seq1 Length=10671843 Score = 82.4 bits (90), Expect = 5e-11 Identities = 130/182 (71%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 23620 TTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTT 23679 ||||| || ||||||||||| || || ||||| ||||| || || || | ||||| | Sbjct 8978419 TTCGTCAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTCGAATCGAGCGACACAATC 8978360 Query 23680 GA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTT 23738 || ||| | ||| | ||||| ||||| ||||| | || || || || ||||| || Sbjct 8978359 GACAATGTCAAATC-CAAAATCCAGGACAAGGAAGGCATCCCACCGGACCAGCAGCGATT 8978301 Query 23739 AATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTACAACATACAA 23796 || ||||| ||||| || |||| || | || |||||| ||| |||||||| || Sbjct 8978300 GATCTTTGCGGGCAAGCAGTTGGAGGATGGCCGTACACTTT--CCGACTACAACATCCAG 8978243 Query 23797 AA 23798 || Sbjct 8978242 AA 8978241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009571163556