Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq2 111 1e-19
seq1 82.4 5e-11
>seq2
Length=7009248
Score = 111 bits (122), Expect = 1e-19
Identities = 151/211 (72%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
||||||||| ||||| || || || || || || || || || || ||||| || || |
Sbjct 3059403 AATGCAGATCTTCGTAAAGACGCTTACTGGGAAGACAATAACGCTGGAAGTCGAATCATC 3059462
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || | | || || || |||||||| ||| | || ||||| ||
Sbjct 3059463 AGACACAATCGACAACGTCAAGTCGAAGATCCAAGACAAAGAGGGTATCCCACCAGACCA 3059522
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| || || || |||||||| || ||||||||| || || | | ||||||||
Sbjct 3059523 ACAGCGATTGATCTTCGCCGGCAAGCAGTTGGAAGACGGCCGGACACTGAGTGATTACAA 3059582
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820
||| ||||||||| |||||| || || |||
Sbjct 3059583 CATCCAAAAAGAGAGCACATTGCACTTGGTT 3059613
Score = 109 bits (120), Expect = 4e-19
Identities = 147/200 (74%), Gaps = 6/200 (3%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || || || || || || || || || ||||||||||| || |
Sbjct 3059176 ATGCAGATCTTCGTCAAGACACTGACTGGCAAGACTATTACCCTCGAAGTTGAGTCGTCA 3059235
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| | || | || | | || |||||||| | || || |||||
Sbjct 3059236 GACACCATCGACAATGTGAAGTCGAAGA-TACAGGATAAAGAAGGCATCCCACCGGATCA 3059294
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGA--CGAACGCACTTTAGGCGATTAC 23787
||||||| | |||||||||||||| || ||||| || || |||||| |||||||
Sbjct 3059295 ACAGCGTCTCATATTTGCCGGCAAGCAGCTGGAGGATGGGAGGACACTTT--CCGATTAC 3059352
Query 23788 AACATACAAAAAGAGTCCAC 23807
||||| || |||||||| ||
Sbjct 3059353 AACATTCAGAAAGAGTCAAC 3059372
Score = 95.1 bits (104), Expect = 8e-15
Identities = 165/236 (70%), Gaps = 3/236 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || || || || || ||||| |||||||| | |||||||| |
Sbjct 3059632 ATGCAGATCTTTGTCAAGACGCTTACCGGAAAGACGATCACCTTGGAAGTTGAGAGTTCC 3059691
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| || |||| | || | | |||||||| ||| | ||||| || ||
Sbjct 3059692 GACACGATTGACAACGTTAAGAGCAAGA-TCCAGGACAAAGAGGGTATCCCGCCGGACCA 3059750
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||||| || ||||| || || || ||||| || | || || || ||||||||
Sbjct 3059751 GCAGCGTTTGATTTTTGCTGGGAAGCAGCTGGAGGATGGCCGAACGTTGTCGGATTACAA 3059810
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGATCAGCAG 23845
||| || || ||| ||| | ||||| || | ||| | || || || |||| ||
Sbjct 3059811 CATCCAGAAGGAGAGCACCCTGCATTTGGTGCTTAGGCTTCGTGGCGG-TCAGTAG 3059865
>seq1
Length=10671843
Score = 82.4 bits (90), Expect = 5e-11
Identities = 130/182 (71%), Gaps = 6/182 (3%)
Strand=Plus/Minus
Query 23620 TTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTT 23679
||||| || ||||||||||| || || ||||| ||||| || || || | ||||| |
Sbjct 8978419 TTCGTCAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTCGAATCGAGCGACACAATC 8978360
Query 23680 GA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTT 23738
|| ||| | ||| | ||||| ||||| ||||| | || || || || ||||| ||
Sbjct 8978359 GACAATGTCAAATC-CAAAATCCAGGACAAGGAAGGCATCCCACCGGACCAGCAGCGATT 8978301
Query 23739 AATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTACAACATACAA 23796
|| ||||| ||||| || |||| || | || |||||| ||| |||||||| ||
Sbjct 8978300 GATCTTTGCGGGCAAGCAGTTGGAGGATGGCCGTACACTTT--CCGACTACAACATCCAG 8978243
Query 23797 AA 23798
||
Sbjct 8978242 AA 8978241
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338009571163556
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |