Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq4 100 2e-16 >seq4 Length=4557415 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 27115 CTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCG 27174 || ||||| || || || || |||| || |||||||| |||||||| || |||||| Sbjct 3812214 CTTGGCTCTCTTTCTAGTTGTACTTTCAACGCATCCACGTGGTCCAGGTACACATGAGCG 3812155 Query 27175 TCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTAC 27234 ||||||| ||||| | ||| ||||| || | || ||||| | ||| | | Sbjct 3812154 TCTCCCATTGTGTGTATGAACGTCCCCGGCGTAAGATCACAAACATGAGCGAGCATATGC 3812095 Query 27235 GTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTC 27294 ||||||| || |||| ||||||||| ||||| || ||||| || || || | || | Sbjct 3812094 GTGAGGATAGCGTAGGAGGCGATGTTGAAGGGCACGCCGAGACCAATATCGCAAGAGCGT 3812035 Query 27295 TGGTAGAGCTGACACGAGAG 27314 ||||| || ||||| || || Sbjct 3812034 TGGTATAGTTGACAGGATAG 3812015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369507168476417