Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq4 100 2e-16
>seq4
Length=4557415
Score = 100 bits (110), Expect = 2e-16
Identities = 142/200 (71%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 27115 CTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCG 27174
|| ||||| || || || || |||| || |||||||| |||||||| || ||||||
Sbjct 3812214 CTTGGCTCTCTTTCTAGTTGTACTTTCAACGCATCCACGTGGTCCAGGTACACATGAGCG 3812155
Query 27175 TCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTAC 27234
||||||| ||||| | ||| ||||| || | || ||||| | ||| | |
Sbjct 3812154 TCTCCCATTGTGTGTATGAACGTCCCCGGCGTAAGATCACAAACATGAGCGAGCATATGC 3812095
Query 27235 GTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTC 27294
||||||| || |||| ||||||||| ||||| || ||||| || || || | || |
Sbjct 3812094 GTGAGGATAGCGTAGGAGGCGATGTTGAAGGGCACGCCGAGACCAATATCGCAAGAGCGT 3812035
Query 27295 TGGTAGAGCTGACACGAGAG 27314
||||| || ||||| || ||
Sbjct 3812034 TGGTATAGTTGACAGGATAG 3812015
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369507168476417
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |